Align acetohydroxyacid isomeroreductase (EC 1.1.1.86) (characterized)
to candidate CCNA_02204 CCNA_02204 ketol-acid reductoisomerase/2-dehydropantoate 2-reductase
Query= metacyc::MONOMER-18814 (338 letters) >FitnessBrowser__Caulo:CCNA_02204 Length = 339 Score = 476 bits (1226), Expect = e-139 Identities = 231/339 (68%), Positives = 277/339 (81%), Gaps = 1/339 (0%) Query: 1 MKVFYDKDADLSLIKGKNVTIIGYGSQGHAHALNLKDSGV-NVTVGLRKSGASWNKAANA 59 M+V+YD+DADL+ I + + I+GYGSQGHAHALNL+DSG+ NV V LR + KA Sbjct: 1 MRVYYDRDADLARILDRKIAIVGYGSQGHAHALNLRDSGIKNVAVALRAGSPTAKKAEGE 60 Query: 60 GLQVKEVAEAVKGADVVMILLPDEQIADVYKNEVHDNIKEGAALAFAHGFNVHYGAVIPR 119 GL+V VAEA AD++MIL PDE A +YKNE+ NI++GAAL FAHG NVH+G + P+ Sbjct: 61 GLKVMTVAEAAAWADLIMILAPDEHQAAIYKNEIALNIRDGAALLFAHGLNVHFGLIEPK 120 Query: 120 ADLDVIMIAPKAPGHTVRATYTQGGGVPHLIAVHQNKSGAARDIALSYATANGGGRAGII 179 +DV+M+APK PGHTVR Y +GGGVP LIAVH N +G A D+ L+YA+A GGGR+GII Sbjct: 121 DTIDVLMVAPKGPGHTVRGEYQKGGGVPCLIAVHHNATGNALDLGLAYASAIGGGRSGII 180 Query: 180 ETNFREETETDLFGEQAVLCGGTVELIKAGFETLVEAGYAPEMAYFECLHELKLIVDLIY 239 ETNFREE ETDLFGEQAVLCGGTVEL++AGFETLVEAGYAPEMAYFECLHELKLIVDL+Y Sbjct: 181 ETNFREECETDLFGEQAVLCGGTVELVRAGFETLVEAGYAPEMAYFECLHELKLIVDLMY 240 Query: 240 EGGIANMNYSISNNAEYGEYVTGPRVVTEETKKAMKQCLTDIQTGEYAKSFLLENKAGAP 299 EGGIANMNYSISN AEYGEYVTGPR++T ETK MK+ L DIQ+G++ + F+LEN G P Sbjct: 241 EGGIANMNYSISNTAEYGEYVTGPRIITPETKAEMKRVLEDIQSGKFVRDFMLENAVGQP 300 Query: 300 TLISRRRLTAEHQIEEVGAKLRAMMPWIAKNKMVDQSKN 338 + + RR +AEHQIEEVGA+LR MMPWIAKNK+VDQ+KN Sbjct: 301 SFKATRRRSAEHQIEEVGARLRGMMPWIAKNKLVDQAKN 339 Lambda K H 0.316 0.133 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 427 Number of extensions: 15 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 338 Length of database: 339 Length adjustment: 28 Effective length of query: 310 Effective length of database: 311 Effective search space: 96410 Effective search space used: 96410 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 49 (23.5 bits)
Align candidate CCNA_02204 CCNA_02204 (ketol-acid reductoisomerase/2-dehydropantoate 2-reductase)
to HMM TIGR00465 (ilvC: ketol-acid reductoisomerase (EC 1.1.1.86))
../bin/blast/fastacmd -i /tmp/list.15237.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.15237.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.