GapMind for Amino acid biosynthesis

 

Alignments for a candidate for metE in Caulobacter crescentus NA1000

Align 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase (EC 2.1.1.14) (characterized)
to candidate CCNA_00515 CCNA_00515 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase

Query= BRENDA::P25665
         (753 letters)



>FitnessBrowser__Caulo:CCNA_00515
          Length = 777

 Score =  814 bits (2102), Expect = 0.0
 Identities = 423/775 (54%), Positives = 531/775 (68%), Gaps = 24/775 (3%)

Query: 1   MTILNHTLGFPRVGLRRELKKAQESYWAGNSTREELLAVGRELRARHWDQQKQAGIDLLP 60
           MT+   TLGFPR+G +RELK A E+YWAG +  + LL   R+LRA+ W +Q   G+  +P
Sbjct: 1   MTVTIATLGFPRIGPKRELKFALEAYWAGKTDADALLDTARDLRAKTWTRQAALGVAHVP 60

Query: 61  VGDFAWYDHVLTTSLLLGNVPARHQNKDGSVDIDTLFRIGRG---------------RAP 105
             DF+ YDHVL T++++G +PA +    G+VD+ T F + RG                AP
Sbjct: 61  SNDFSLYDHVLDTAVMVGAIPAAYGWSGGTVDLATYFAMARGDQGRPAAEACGPGCGHAP 120

Query: 106 TGEPAAAAEMTKWFNTNYHYMVPEFVKGQQFKLTWTQLLDEVDEALALGHKVKPVLLGPV 165
             +   A EMTKWF+TNYHY+ PE   GQ F LT ++ +DE  EA ALG   +PVLLGPV
Sbjct: 121 GADGVPALEMTKWFDTNYHYLAPELSPGQAFALTSSKPVDEFLEAKALGVHTRPVLLGPV 180

Query: 166 TWLWLGKVKGEQFDRLSLLNDILPVYQQVLAELAKRGIEWVQIDEPALVLELPQAWLDAY 225
           T+L L K K E F  LSLL+ +LPVY QVL  LA  G +WVQIDEP L L+L        
Sbjct: 181 TFLKLAKTKAEGFSPLSLLSALLPVYGQVLRGLAAAGADWVQIDEPCLALDLTDFERAEL 240

Query: 226 KPAYDALQGQ---VKLLLTTYFEGVTPNLDTITALPVQGLHVDLVHGKDDVAELHKRLPS 282
           + AY AL      V+L+LT+YF G   NL T   LPV+GLH+DLV   D++         
Sbjct: 241 RRAYGALTHAAPGVRLMLTSYFGGYGENLATAVNLPVEGLHLDLVRAPDELEAALAASRE 300

Query: 283 DWLLSAGLINGRNVWRADLTEKYAQIKDIVGKRD---LWVASSCSLLHSPIDLSVETRLD 339
             +LS G+I+GRNVWRADL     +++ +V +R    + +A SCSLLH+PIDL +ET LD
Sbjct: 301 SLVLSLGVIDGRNVWRADLPALLDRLEPVVARRGSDRVVLAPSCSLLHTPIDLDLETALD 360

Query: 340 AEVKSWFAFALQKCHELALLRDALNSGDTAALAEWSAPIQARRH---STRVHNPAVEKRL 396
            E++ W AFA+QK   LA+L  ALN G  +  A   A  QA R    S R+H+P V +RL
Sbjct: 361 PEIRQWLAFAVQKVEALAVLAQALNGGRASVAAALEASAQAARARATSPRIHDPKVAERL 420

Query: 397 AAITAQDSQRANVYEVRAEAQRARFKLPAWPTTTIGSFPQTTEIRTLRLDFKKGNLDANN 456
           AA+T   ++R + Y+ R EAQRAR  LP  PTTTIGSFPQTTE+R  R  F KG +    
Sbjct: 421 AAVTPDMTRRRSPYDQRREAQRARLNLPPLPTTTIGSFPQTTEVRQARAAFAKGQISDAT 480

Query: 457 YRTGIAEHIKQAIVEQERLGLDVLVHGEAERNDMVEYFGEHLDGFVFTQNGWVQSYGSRC 516
           Y   + +   +A+  QE +GLDVLVHGE ERNDMV+YFGE L GF FTQ+GWVQSYGSRC
Sbjct: 481 YEAFLRQETARAVAWQETVGLDVLVHGEFERNDMVQYFGEQLAGFAFTQSGWVQSYGSRC 540

Query: 517 VKPPIVIGDISRPAPITVEWAKYAQSLTDKPVKGMLTGPVTILCWSFPREDVSRETIAKQ 576
           V+PPI+ GD+SRPAP+TV+W +YAQ LT +P+KGMLTGPVTIL WSF R+D+ RET  +Q
Sbjct: 541 VRPPILFGDVSRPAPMTVDWWRYAQGLTRRPMKGMLTGPVTILNWSFVRDDLPRETACRQ 600

Query: 577 IALALRDEVADLEAAGIGIIQIDEPALREGLPLRRSDWDAYLQWGVEAFRINAAVAKDDT 636
           IALA+RDEV DLEA G  IIQIDE ALREGLPLRR DWDAYL W VE+FR+ A+   D T
Sbjct: 601 IALAIRDEVVDLEATGAAIIQIDEAALREGLPLRRGDWDAYLDWAVESFRLAASGVADAT 660

Query: 637 QIHTHMCYCEFNDIMDSIAALDADVITIETSRSDMELLESFEEFDYPNEIGPGVYDIHSP 696
           QIHTHMCY EFNDI+ +I A+DADVI+IET+RS MELL++F  + YP +IGPGVYDIHSP
Sbjct: 661 QIHTHMCYSEFNDIIAAIGAMDADVISIETARSKMELLDAFVGYAYPAQIGPGVYDIHSP 720

Query: 697 NVPSVEWIEALLKKAAKRIPAERLWVNPDCGLKTRGWPETRAALANMVQAAQNLR 751
            VP+VE +  LL  A +R+  E+LWVNPDCGLKTR WPET+AA+ NMV+AA+  R
Sbjct: 721 RVPAVEEMTTLLAAARQRLAGEQLWVNPDCGLKTRKWPETQAAIVNMVEAARRAR 775


Lambda     K      H
   0.319    0.135    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 1607
Number of extensions: 82
Number of successful extensions: 7
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 753
Length of database: 777
Length adjustment: 40
Effective length of query: 713
Effective length of database: 737
Effective search space:   525481
Effective search space used:   525481
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)

Align candidate CCNA_00515 CCNA_00515 (5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase)
to HMM TIGR01371 (metE: 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase (EC 2.1.1.14))

Software error:

../bin/blast/fastacmd -i /tmp/list.3061.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.3061.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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