GapMind for Amino acid biosynthesis

 

Alignments for a candidate for metX in Caulobacter crescentus NA1000

Align Homoserine O-acetyltransferase; HAT; Homoserine transacetylase; HTA; EC 2.3.1.31 (characterized)
to candidate CCNA_00559 CCNA_00559 homoserine O-acetyltransferase

Query= SwissProt::Q9AAS1
         (382 letters)



>FitnessBrowser__Caulo:CCNA_00559
          Length = 382

 Score =  775 bits (2000), Expect = 0.0
 Identities = 382/382 (100%), Positives = 382/382 (100%)

Query: 1   MAALDPITPAGGGTWRFPANEPLRLDSGGVIEGLEIAYQTYGQLNADKSNAVLICHALTG 60
           MAALDPITPAGGGTWRFPANEPLRLDSGGVIEGLEIAYQTYGQLNADKSNAVLICHALTG
Sbjct: 1   MAALDPITPAGGGTWRFPANEPLRLDSGGVIEGLEIAYQTYGQLNADKSNAVLICHALTG 60

Query: 61  DQHVASPHPTTGKPGWWQRLVGPGKPLDPARHFIICSNVIGGCMGSTGPASINPATGKTY 120
           DQHVASPHPTTGKPGWWQRLVGPGKPLDPARHFIICSNVIGGCMGSTGPASINPATGKTY
Sbjct: 61  DQHVASPHPTTGKPGWWQRLVGPGKPLDPARHFIICSNVIGGCMGSTGPASINPATGKTY 120

Query: 121 GLSFPVITIADMVRAQAMLVSALGVETLFAVVGGSMGGMQVQQWAVDYPERMFSAVVLAS 180
           GLSFPVITIADMVRAQAMLVSALGVETLFAVVGGSMGGMQVQQWAVDYPERMFSAVVLAS
Sbjct: 121 GLSFPVITIADMVRAQAMLVSALGVETLFAVVGGSMGGMQVQQWAVDYPERMFSAVVLAS 180

Query: 181 ASRHSAQNIAFHEVGRQAIMADPDWRGGAYAEHGVRPEKGLAVARMAAHITYLSEPALQR 240
           ASRHSAQNIAFHEVGRQAIMADPDWRGGAYAEHGVRPEKGLAVARMAAHITYLSEPALQR
Sbjct: 181 ASRHSAQNIAFHEVGRQAIMADPDWRGGAYAEHGVRPEKGLAVARMAAHITYLSEPALQR 240

Query: 241 KFGRELQRDGLSWGFDADFQVESYLRHQGSSFVDRFDANSYLYITRAMDYFDIAASHGGV 300
           KFGRELQRDGLSWGFDADFQVESYLRHQGSSFVDRFDANSYLYITRAMDYFDIAASHGGV
Sbjct: 241 KFGRELQRDGLSWGFDADFQVESYLRHQGSSFVDRFDANSYLYITRAMDYFDIAASHGGV 300

Query: 301 LAKAFTRARNVRFCVLSFSSDWLYPTAENRHLVRALTAAGARAAFAEIESDKGHDAFLLD 360
           LAKAFTRARNVRFCVLSFSSDWLYPTAENRHLVRALTAAGARAAFAEIESDKGHDAFLLD
Sbjct: 301 LAKAFTRARNVRFCVLSFSSDWLYPTAENRHLVRALTAAGARAAFAEIESDKGHDAFLLD 360

Query: 361 EPVMDAALEGFLASAERDRGLV 382
           EPVMDAALEGFLASAERDRGLV
Sbjct: 361 EPVMDAALEGFLASAERDRGLV 382


Lambda     K      H
   0.321    0.135    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 701
Number of extensions: 20
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 382
Length of database: 382
Length adjustment: 30
Effective length of query: 352
Effective length of database: 352
Effective search space:   123904
Effective search space used:   123904
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)

Align candidate CCNA_00559 CCNA_00559 (homoserine O-acetyltransferase)
to HMM TIGR01392 (metX: homoserine O-acetyltransferase (EC 2.3.1.31))

Software error:

../bin/blast/fastacmd -i /tmp/list.8794.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.8794.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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