Align glutamate 5-kinase (EC 2.7.2.11) (characterized)
to candidate CCNA_00316 CCNA_00316 glutamate 5-kinase
Query= BRENDA::P0A7B5 (367 letters) >FitnessBrowser__Caulo:CCNA_00316 Length = 377 Score = 282 bits (721), Expect = 1e-80 Identities = 161/365 (44%), Positives = 228/365 (62%), Gaps = 7/365 (1%) Query: 4 SQTLVVKLGTSVLTGGSR-RLNRAHIVELVRQCAQLHAAGHRIVIVTSGAIAAGREHLGY 62 ++ +V K+G+++L NRA + A L AAG ++++V+SGA+A GR LG Sbjct: 12 ARRIVFKVGSALLVDAETGAANRAWLEAFCADAADLRAAGKQVLVVSSGAVALGRRRLGL 71 Query: 63 PELPATIASKQLLAAVGQSRLIQLWEQLFSIYGIHVGQMLLTRADMEDRERFLNARDTLR 122 T+ KQ AA GQS L++ WE+ F +GI V Q+LLTR D E R R+LNAR T Sbjct: 72 TGRKTTLPEKQAAAAAGQSLLMRAWEEAFEPHGIGVAQILLTRDDTEMRRRWLNARATTE 131 Query: 123 ALLDNNIVPVINENDAVATAEIKVGDNDNLSALAAILAGADKLLLLTDQKGLYTADPRSN 182 L+ +VPV+NEND V T EI+ GDND L+A A +AGAD L+LL+D GLYTADPR N Sbjct: 132 TLMGLGVVPVVNENDTVVTEEIRYGDNDRLAARVAQMAGADLLVLLSDIDGLYTADPRKN 191 Query: 183 PQAELIKDVYGIDDALRAIA--GDSVSGLGTGGMSTKLQAADVACRAGIDTIIAAGSKPG 240 P+A+ I V I + +A ++ +G+GTGGM+TK+ AA +A AG T+I GS+P Sbjct: 192 PKAQHIPRVSEITPEIAGMAEGANAAAGVGTGGMATKIAAARIARAAGCATLITLGSRPR 251 Query: 241 VIGDVMEGISVGTLFHAQATPLENRKRWIFGA-PPAGEITVDEGATAAILERGSSLLPKG 299 + + G TL A A+P K WI G+ P G +TVD GA +A+L G SLLP G Sbjct: 252 PLAAIAAG-EKATLIEAGASPAAAYKAWIAGSLAPQGWVTVDAGAASALL-AGKSLLPAG 309 Query: 300 IKSVTGNFSRGEVIRICNLEGRDIAHGVSRYNSDALRRIAGHHSQEIDAILGYEYGPVAV 359 +++V G F +G+ +R+ + GR++A G+ RY+S +RIAG S I+A LG+ GP+ + Sbjct: 310 VRAVEGPFDKGDAVRVRDENGREVARGLVRYDSADAQRIAGLRSDAIEAELGFTEGPM-I 368 Query: 360 HRDDM 364 H DD+ Sbjct: 369 HADDL 373 Lambda K H 0.318 0.135 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 384 Number of extensions: 23 Number of successful extensions: 4 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 367 Length of database: 377 Length adjustment: 30 Effective length of query: 337 Effective length of database: 347 Effective search space: 116939 Effective search space used: 116939 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 49 (23.5 bits)
Align candidate CCNA_00316 CCNA_00316 (glutamate 5-kinase)
to HMM TIGR01027 (proB: glutamate 5-kinase (EC 2.7.2.11))
../bin/blast/fastacmd -i /tmp/list.16532.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.16532.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.