Align Aspartate-semialdehyde dehydrogenase 2; ASA dehydrogenase 2; ASADH 2; Aspartate-beta-semialdehyde dehydrogenase 2; EC 1.2.1.11 (characterized)
to candidate CCNA_00253 CCNA_00253 aspartate-semialdehyde dehydrogenase
Query= SwissProt::P23247 (337 letters) >FitnessBrowser__Caulo:CCNA_00253 Length = 342 Score = 310 bits (793), Expect = 4e-89 Identities = 161/330 (48%), Positives = 226/330 (68%), Gaps = 4/330 (1%) Query: 5 FNVAIFGATGAVGETMLEVLQEREFPVDELFLLASERSEGKTYRFNGKTVRVQNVEEFDW 64 + VA+ GATG VG M +L+E +FPVD++ +AS +S G F + ++ +++E+FD+ Sbjct: 3 YRVAVVGATGNVGREMFNILEEVKFPVDKMHAIASRKSIGVEVSFGNEILKCEDLEQFDF 62 Query: 65 SQVHIALFSAGGELSAKWAPIAAEAGVVVIDNTSHFRYDYDIPLVVPEVNPEAIAEFRNR 124 S+V + L SAGG +S W AG +VIDN+SHFR D D+PLVVPEVNPEA+ + Sbjct: 63 SKVDLVLMSAGGSISKAWGEKIGAAGPIVIDNSSHFRMDPDVPLVVPEVNPEAVNSI-PK 121 Query: 125 NIIANPNCSTIQMLVALKPIYDAVGIERINVTTYQSVSGAGKAGIDELAGQTAKLLNGYP 184 NIIANPNCST Q++VALKP++D I+R+ V+TYQSVSGAGK G+DEL QT + Sbjct: 122 NIIANPNCSTAQLVVALKPLHDEAKIKRVVVSTYQSVSGAGKEGMDELWDQTKGVYVLGA 181 Query: 185 AETNTFSQQIAFNCIPQIDQFMDNGYTKEEMKMVWETQKIFNDPSIMVNPTCVRVPVFYG 244 F++QIAFN IP ID FMD+G+TKEE KM ETQKI DP+I + TCVRVPV G Sbjct: 182 PPPKKFTKQIAFNVIPHIDVFMDDGFTKEEWKMAVETQKIL-DPAIKLTATCVRVPVMVG 240 Query: 245 HAEAVHVETRAPIDAEQVMDMLEQTDGIELFRGADFPTQV--RDAGGKDHVLVGRVRNDI 302 H+E+V+VE +P+D ++ ++L + DGI + + + +++ G+ V + R+R D Sbjct: 241 HSESVNVEFESPLDEDEAREILREADGIVVVDKREDGGYITPKESQGEFPVYISRIRKDP 300 Query: 303 SHHSGINLWVVADNVRKGAATNAVQIAELL 332 + +G+ W V+DN+RKGAA NAVQIA+LL Sbjct: 301 TVENGLAFWCVSDNLRKGAALNAVQIAQLL 330 Lambda K H 0.319 0.135 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 316 Number of extensions: 10 Number of successful extensions: 5 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 337 Length of database: 342 Length adjustment: 28 Effective length of query: 309 Effective length of database: 314 Effective search space: 97026 Effective search space used: 97026 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 49 (23.5 bits)
Align candidate CCNA_00253 CCNA_00253 (aspartate-semialdehyde dehydrogenase)
to HMM TIGR01296 (asd: aspartate-semialdehyde dehydrogenase (EC 1.2.1.11))
../bin/blast/fastacmd -i /tmp/list.5849.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.5849.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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