Align aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) (characterized)
to candidate CCNA_03599 CCNA_03599 aspartate-semialdehyde dehydrogenase
Query= BRENDA::P9WNX5 (345 letters) >FitnessBrowser__Caulo:CCNA_03599 Length = 348 Score = 373 bits (958), Expect = e-108 Identities = 208/338 (61%), Positives = 242/338 (71%), Gaps = 6/338 (1%) Query: 5 IGIVGATGQVGQVMRTLLDERDFPASAVRFFASARSQGRKLAFRGQEIEVEDAETADPSG 64 +G+VGATG VG +MR LL ERDFP +++R FASARS G K+ F GQ+I VEDA TAD SG Sbjct: 13 VGVVGATGLVGGMMRELLVERDFPVASLRLFASARSAGGKIDFNGQQIVVEDAATADFSG 72 Query: 65 LDIALFSAGSAMSKVQAPRFAAAGVTVIDNSSAWRKDPDVPLVVSEVNFERDAHRRPKGI 124 LDI FSAG + S+ AP+ AAAG VIDNSSAWR DP+VPLVV+EVN PKGI Sbjct: 73 LDIVFFSAGGSTSRELAPKAAAAGAVVIDNSSAWRSDPEVPLVVAEVN-PHALQNIPKGI 131 Query: 125 IANPNCTTMAAMPVLKVLHDEARLVRLVVSSYQAVSGSGLAGVAELAEQARA-VIGGAEQ 183 +ANPNCTTMAAMPVLK LHD+A L RL VS+YQA SG G+ G+ L+EQ RA G + Sbjct: 132 VANPNCTTMAAMPVLKPLHDKAGLKRLTVSTYQAASGGGMEGIEVLSEQLRAGAAGDLDG 191 Query: 184 LVYDGGALEFPPPNTYVAPIAFNVVPLAGSLVDDGSGETDEDQKLRFESRKILGIPDLLV 243 L A P P + P+A+NVVPL L +D G T+E+ KLR ESRKIL IP L V Sbjct: 192 LARSPDAAPLPAPRKWAVPLAYNVVPLNYVLGED--GYTEEELKLRDESRKILEIPGLPV 249 Query: 244 SGTCVRVPVFTGHSLSINAEFAQPLSPERARELLDGATGVQLVDVPTPLAAAGVDESLVG 303 SGTCVRVPVFTGH+LSINAEF P+S A +LL A GV + DVP PLAA G D VG Sbjct: 250 SGTCVRVPVFTGHALSINAEFDGPVSVAEALDLLAAAPGVVIDDVPNPLAATGQDPVFVG 309 Query: 304 RIRRDPGVPDGRGLALFVSGDNLRKGAALNTIQIAELL 341 R+R DP VP GLALFV GDNLRKGAALN +QIAE++ Sbjct: 310 RVRPDPTVP--HGLALFVVGDNLRKGAALNAVQIAEVM 345 Lambda K H 0.317 0.135 0.382 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 441 Number of extensions: 24 Number of successful extensions: 5 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 345 Length of database: 348 Length adjustment: 29 Effective length of query: 316 Effective length of database: 319 Effective search space: 100804 Effective search space used: 100804 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 49 (23.5 bits)
Align candidate CCNA_03599 CCNA_03599 (aspartate-semialdehyde dehydrogenase)
to HMM TIGR01296 (asd: aspartate-semialdehyde dehydrogenase (EC 1.2.1.11))
../bin/blast/fastacmd -i /tmp/list.21775.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.21775.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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