Align Threonine synthase; TS; EC 4.2.3.1 (uncharacterized)
to candidate CCNA_03510 CCNA_03510 threonine synthase
Query= curated2:P29363 (469 letters) >FitnessBrowser__Caulo:CCNA_03510 Length = 465 Score = 422 bits (1084), Expect = e-122 Identities = 221/459 (48%), Positives = 293/459 (63%), Gaps = 1/459 (0%) Query: 1 MRYISTRGQAPALNFEDVLLAGLASDGGLYVPENLPRFTLEEIASWVGLPYHELAFRVMR 60 MRY+STRGQ+ + F D +LAGLA DGGLYVP P FT ++IA++ G PY E+A V+ Sbjct: 1 MRYVSTRGQSAPIGFLDAVLAGLAPDGGLYVPAEWPSFTAKQIAAFAGKPYAEVAAAVVG 60 Query: 61 PFVAGSIADADFKKILEETYGVFAHDAVAPLRQLNGNEWVLELFHGPTLAFKDFALQLLG 120 FV I D ++ EE Y FAH AV P++QL N ++LELFHGPTLAFKD A+QLLG Sbjct: 61 KFVGDDIPADDLLQMCEEAYATFAHTAVTPVKQLTANRYLLELFHGPTLAFKDVAMQLLG 120 Query: 121 RLLDHVLAKRGERVVIMGATSGDTGSAAIEGCRRCDNVDIFIMHPHNRVSEVQRRQMTTI 180 RL D+VL ++ ++ I+ ATSGDTG AA+E R N I + P R+SEVQRR MTT Sbjct: 121 RLYDYVLERQSRKMTIICATSGDTGGAAVEAFRGRKNARIVALFPEGRISEVQRRFMTTA 180 Query: 181 LGDNIHNIAIEGNFDDCQEMVKASFADQGFLKGTRLVAVNSINWARIMAQIVYYFHAALQ 240 N+ +++ G+FDDCQ +VK +F D F L VNSINWARI AQ VYYF AA+ Sbjct: 181 TDANVACVSVLGSFDDCQAIVKQAFQDDQFRHAVDLSGVNSINWARIAAQSVYYFTAAVA 240 Query: 241 LGAPHRSVAFSVPTGNFGDIFAGYLARNMGLPVSQLIVATNRNDILHRFMSGNRYDKDTL 300 LGAP R VAF VPTGNFGD +A ++A+ +GLP+ + ATN NDIL R RY + + Sbjct: 241 LGAPAREVAFVVPTGNFGDAYAAFVAKTLGLPIHSVTAATNSNDILARAFEDGRYSRGAV 300 Query: 301 HPSLSPSMDIMVSSNFERLLFDLHGRNGKAVAELLDAFKASGKLSVEDQRWTEARKLFDS 360 + SP+MDI V+SNFERL F+ R+G AF +G L + R+LF Sbjct: 301 AATQSPAMDIQVASNFERLYFEAVRRDGVETGRAFRAFADTGLLDIPPAAHAWMRELFRG 360 Query: 361 LAVSDEQTCETIAEVYRSSGELLDPHTAIGVRAARECRRSLSVPMVTLGTAHPVKFPEAV 420 +VS+ T +T+ +GE++DPHTA+G+ AA+ R ++P+V L TAHP KFPEAV Sbjct: 361 ASVSEADTAKTMLSTLNETGEVVDPHTAVGLAAAQGVRIDPAIPVVVLSTAHPAKFPEAV 420 Query: 421 EKAGIGQAPALPAHLADLFEREERCTVLPNELAKVQAFV 459 + A G P+ P DL ++ E+ LP + + V+AFV Sbjct: 421 Q-AATGLLPSTPRATPDLSKKPEKFERLPADGSSVKAFV 458 Lambda K H 0.322 0.137 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 541 Number of extensions: 22 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 469 Length of database: 465 Length adjustment: 33 Effective length of query: 436 Effective length of database: 432 Effective search space: 188352 Effective search space used: 188352 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 51 (24.3 bits)
Align candidate CCNA_03510 CCNA_03510 (threonine synthase)
to HMM TIGR00260 (thrC: threonine synthase (EC 4.2.3.1))
../bin/blast/fastacmd -i /tmp/list.13125.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.13125.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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