Align ribose-phosphate diphosphokinase (EC 2.7.6.1) (characterized)
to candidate Echvi_4597 Echvi_4597 ribose-phosphate pyrophosphokinase
Query= BRENDA::P0A717 (315 letters) >FitnessBrowser__Cola:Echvi_4597 Length = 309 Score = 295 bits (754), Expect = 1e-84 Identities = 158/314 (50%), Positives = 215/314 (68%), Gaps = 7/314 (2%) Query: 1 MPDMKLFAGNATPELAQRIANRLYTSLGDAAVGRFSDGEVSVQINENVRGGDIFIIQSTC 60 MP++KLFAG T +LA IA LG + FSDGE+S +E+VRG +F+IQST Sbjct: 1 MPEVKLFAGTNTKKLADSIAGNYGQDLGAMTLSMFSDGEMSPSFDESVRGCHVFLIQST- 59 Query: 61 APTNDNLMELVVMVDALRRASAGRITAVIPYFGYARQDRRVRSARVPITAKVVADFLSSV 120 P DNL+EL +M+DA +RASA ++ AV+PY+GYARQDR+ R RV I AK++A+ + S Sbjct: 60 NPNADNLLELCLMIDAAKRASAYKVCAVVPYYGYARQDRKDRP-RVSIAAKLIANMIMSA 118 Query: 121 GVDRVLTVDLHAEQIQGFFDVPVDNVFGSPILLEDMLQLNL-DNPIVVSPDIGGVVRARA 179 G DR++T DLHA QIQGFFD+P+D++ GS I + + L+L DN I SPD+GGV RARA Sbjct: 119 GADRIMTCDLHAGQIQGFFDIPLDHLNGSAIFVPYLKSLDLGDNLIFASPDVGGVSRARA 178 Query: 180 IAKLLNDTDMAIIDKRRPRANVSQVMHIIGDVAGRDCVLVDDMIDTGGTLCKAAEALKER 239 AK + DM + DK R RAN M +IGDV G+D VLVDD++DT GT+CKAAE L ++ Sbjct: 179 YAKHF-EVDMVVCDKHRKRANEVASMQVIGDVEGKDVVLVDDLVDTAGTMCKAAEILLDK 237 Query: 240 GAKRVFAYATHPIFSGNAANNLRNSVIDEVVVCDTIPLSDEIKSLPNVRTLTLSGMLAEA 299 GA V A ATH + SG A N+ NS + E+V+ DTIP+ K ++ LT++ + A+A Sbjct: 238 GANSVRAIATHGVLSGKAYENIENSKLSELVITDTIPIK---KESSKIKVLTVAELFAKA 294 Query: 300 IRRISNEESISAMF 313 I ++ +SISA+F Sbjct: 295 IHAVTGNDSISALF 308 Lambda K H 0.321 0.137 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 280 Number of extensions: 13 Number of successful extensions: 6 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 315 Length of database: 309 Length adjustment: 27 Effective length of query: 288 Effective length of database: 282 Effective search space: 81216 Effective search space used: 81216 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 48 (23.1 bits)
Align candidate Echvi_4597 Echvi_4597 (ribose-phosphate pyrophosphokinase)
to HMM TIGR01251 (prs: ribose-phosphate diphosphokinase (EC 2.7.6.1))
../bin/blast/fastacmd -i /tmp/list.4034.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.4034.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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