GapMind for Amino acid biosynthesis

 

Alignments for a candidate for ilvC in Echinicola vietnamensis KMM 6221, DSM 17526

Align Ketol-acid reductoisomerase (NAD(+)); KARI; Acetohydroxy-acid isomeroreductase; AHIR; Alpha-keto-beta-hydroxylacyl reductoisomerase; EC 1.1.1.382 (characterized)
to candidate Echvi_2058 Echvi_2058 ketol-acid reductoisomerase

Query= SwissProt::A8ZTR0
         (352 letters)



>FitnessBrowser__Cola:Echvi_2058
          Length = 347

 Score =  490 bits (1261), Expect = e-143
 Identities = 239/344 (69%), Positives = 283/344 (82%)

Query: 4   INFGGVEENVVTSEEFTLKKAREVLKNEVITVLGYGVQGPAQALNLKDNGFEVIIGQLEG 63
           + FG VEE+VVT EEF L+KAREVLK+EVI VLGYGVQGP QALNLKDNGF VI+GQ + 
Sbjct: 3   LKFGTVEEDVVTREEFPLEKAREVLKDEVIAVLGYGVQGPGQALNLKDNGFNVIVGQRKN 62

Query: 64  DAYWEKAIADGFVPGKTLFPIEEAAKKGTIIKMLLSDAGQVAVWPKVKKCLKKGDALYFS 123
              W+KA+ADG+VPG+TLF +EEA +KGTI++ LLSDAGQ+A+WP VKK L  G ALYFS
Sbjct: 63  SKTWDKAVADGWVPGETLFELEEACEKGTILQFLLSDAGQIALWPTVKKHLTPGKALYFS 122

Query: 124 HGFGIVYKDQTGIVPPKNVDVILVAPKGSGTNVRRNFKDGSGINSSYAVFQDATGRAEER 183
           HGFG+ YKDQTGIVPP++VDVILVAPKGSGT++RR F +G G+NSS+A++QDATG+A ER
Sbjct: 123 HGFGVTYKDQTGIVPPEDVDVILVAPKGSGTSLRRMFVEGRGLNSSFAIYQDATGKARER 182

Query: 184 TIALGIAIGSGYLFPTTFEKEVFSDLTGERGVLMGCLAGTMEAQYNVLRKHGHSPSEAFN 243
            IALGI +GSGYLF T F +EV SDLTGERG LMG + G   AQY VLR++GHSPSEAFN
Sbjct: 183 VIALGIGVGSGYLFETDFYREVTSDLTGERGTLMGAIQGIFAAQYEVLRENGHSPSEAFN 242

Query: 244 ETVEELTQSLIRLVAENGMDWMFANCSTTAQRGALDWAPKFRDAVAPVFDSLYRRVKNGA 303
           ETVEELTQSL+ LVAENGMDWM+ANCSTTAQRGALDW   FRDA  PVF+ LY+ VK+G 
Sbjct: 243 ETVEELTQSLMPLVAENGMDWMYANCSTTAQRGALDWWKPFRDASKPVFEQLYKSVKDGK 302

Query: 304 ETRRVLKVNSAPNYLEKLRKELDTIKNSEMWQAGAAVRALRPEN 347
           E  + ++ NS  +Y EKL  EL  ++ SEMW+AGA VR LRPEN
Sbjct: 303 EAAKSIESNSKADYREKLEVELKELRESEMWKAGATVRKLRPEN 346


Lambda     K      H
   0.316    0.134    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 464
Number of extensions: 9
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 352
Length of database: 347
Length adjustment: 29
Effective length of query: 323
Effective length of database: 318
Effective search space:   102714
Effective search space used:   102714
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)

Align candidate Echvi_2058 Echvi_2058 (ketol-acid reductoisomerase)
to HMM TIGR00465 (ilvC: ketol-acid reductoisomerase (EC 1.1.1.86))

Software error:

../bin/blast/fastacmd -i /tmp/list.28961.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.28961.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.