Align Ketol-acid reductoisomerase (NAD(+)); KARI; Acetohydroxy-acid isomeroreductase; AHIR; Alpha-keto-beta-hydroxylacyl reductoisomerase; EC 1.1.1.382 (characterized)
to candidate Echvi_2058 Echvi_2058 ketol-acid reductoisomerase
Query= SwissProt::A8ZTR0 (352 letters) >FitnessBrowser__Cola:Echvi_2058 Length = 347 Score = 490 bits (1261), Expect = e-143 Identities = 239/344 (69%), Positives = 283/344 (82%) Query: 4 INFGGVEENVVTSEEFTLKKAREVLKNEVITVLGYGVQGPAQALNLKDNGFEVIIGQLEG 63 + FG VEE+VVT EEF L+KAREVLK+EVI VLGYGVQGP QALNLKDNGF VI+GQ + Sbjct: 3 LKFGTVEEDVVTREEFPLEKAREVLKDEVIAVLGYGVQGPGQALNLKDNGFNVIVGQRKN 62 Query: 64 DAYWEKAIADGFVPGKTLFPIEEAAKKGTIIKMLLSDAGQVAVWPKVKKCLKKGDALYFS 123 W+KA+ADG+VPG+TLF +EEA +KGTI++ LLSDAGQ+A+WP VKK L G ALYFS Sbjct: 63 SKTWDKAVADGWVPGETLFELEEACEKGTILQFLLSDAGQIALWPTVKKHLTPGKALYFS 122 Query: 124 HGFGIVYKDQTGIVPPKNVDVILVAPKGSGTNVRRNFKDGSGINSSYAVFQDATGRAEER 183 HGFG+ YKDQTGIVPP++VDVILVAPKGSGT++RR F +G G+NSS+A++QDATG+A ER Sbjct: 123 HGFGVTYKDQTGIVPPEDVDVILVAPKGSGTSLRRMFVEGRGLNSSFAIYQDATGKARER 182 Query: 184 TIALGIAIGSGYLFPTTFEKEVFSDLTGERGVLMGCLAGTMEAQYNVLRKHGHSPSEAFN 243 IALGI +GSGYLF T F +EV SDLTGERG LMG + G AQY VLR++GHSPSEAFN Sbjct: 183 VIALGIGVGSGYLFETDFYREVTSDLTGERGTLMGAIQGIFAAQYEVLRENGHSPSEAFN 242 Query: 244 ETVEELTQSLIRLVAENGMDWMFANCSTTAQRGALDWAPKFRDAVAPVFDSLYRRVKNGA 303 ETVEELTQSL+ LVAENGMDWM+ANCSTTAQRGALDW FRDA PVF+ LY+ VK+G Sbjct: 243 ETVEELTQSLMPLVAENGMDWMYANCSTTAQRGALDWWKPFRDASKPVFEQLYKSVKDGK 302 Query: 304 ETRRVLKVNSAPNYLEKLRKELDTIKNSEMWQAGAAVRALRPEN 347 E + ++ NS +Y EKL EL ++ SEMW+AGA VR LRPEN Sbjct: 303 EAAKSIESNSKADYREKLEVELKELRESEMWKAGATVRKLRPEN 346 Lambda K H 0.316 0.134 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 464 Number of extensions: 9 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 352 Length of database: 347 Length adjustment: 29 Effective length of query: 323 Effective length of database: 318 Effective search space: 102714 Effective search space used: 102714 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 49 (23.5 bits)
Align candidate Echvi_2058 Echvi_2058 (ketol-acid reductoisomerase)
to HMM TIGR00465 (ilvC: ketol-acid reductoisomerase (EC 1.1.1.86))
../bin/blast/fastacmd -i /tmp/list.28961.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.28961.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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