Align Dihydroxy-acid dehydratase, mitochondrial; DAD; 2,3-dihydroxy acid hydrolyase; EC 4.2.1.9 (characterized)
to candidate Echvi_2055 Echvi_2055 dihydroxy-acid dehydratase
Query= SwissProt::P39522 (585 letters) >FitnessBrowser__Cola:Echvi_2055 Length = 561 Score = 602 bits (1552), Expect = e-176 Identities = 299/563 (53%), Positives = 404/563 (71%), Gaps = 9/563 (1%) Query: 23 LNKYSYIITEPKGQGASQAMLYATGFKKEDFKKPQVGVGSCWWSGNPCNMHLLDLNNRCS 82 L KYS+ I++ + A+ AMLYATG + K+P VGV SC + NPCNMHL Sbjct: 5 LKKYSWEISDNEENPAAMAMLYATGITDKKMKQPFVGVASCGYESNPCNMHLNSFAEDIK 64 Query: 83 QSIEKAGLKAMQFNTIGVSDGISMGTKGMRYSLQSREIIADSFETIMMAQHYDANIAIPS 142 S +A L FNTIG+SDG SMGT GMRYSL SRE+IADS E+ ++ +D + IP Sbjct: 65 ASTNQADLSGFIFNTIGISDGQSMGTSGMRYSLPSREVIADSIESFILGHSFDGVVTIPG 124 Query: 143 CDKNMPGVMMAMGRHNRPSIMVYGGTILPGHPTCGSSKISKNIDIVSAFQSYGEYISKQF 202 CDKNMPGV+M M R NRP IMV+GGTI G+ + ++IVSAF++YG+ I+ Q Sbjct: 125 CDKNMPGVVMGMLRVNRPGIMVFGGTIRSGNYK------GEKLNIVSAFEAYGKKINGQI 178 Query: 203 TEEEREDVVEHACPGPGSCGGMYTANTMASAAEVLGLTIPNSSSFPAVSKEKLAECDNIG 262 ++E+ V+++ACPG G+CGGMYTANTM+SA E +GL++P SSS+PA SKEK EC NIG Sbjct: 179 SDEDYMGVIKNACPGAGACGGMYTANTMSSAIEAMGLSLPFSSSYPATSKEKREECKNIG 238 Query: 263 EYIKKTMELGILPRDILTKEAFENAITYVVATGGSTNAVLHLVAVAHSAGVKLSPDDFQR 322 +YIK+ + L I P+DI+TK++ ENA+ VA GGSTNA LH++A+A +AG+ + +DF+R Sbjct: 239 KYIKQLLALDIKPKDIITKKSLENAVRVTVALGGSTNAALHILAIARTAGIDFTLEDFKR 298 Query: 323 ISDTTPLIGDFKPSGKYVMADLINVGGTQSVIKYLYENNMLHGNTMTVTGDTLAERAKKA 382 I+ TP++GDFKPSGK++M DL +GG + +KY +LHG+ +TVTG T+AE + Sbjct: 299 INAETPVLGDFKPSGKFMMEDLYEMGGLPAFLKYFLNEGLLHGDCLTVTGKTMAENLEDI 358 Query: 383 -PSLPEGQEIIKPLSHPIKANGHLQILYGSLAPGGAVGKITGKEGTYFKGRARVFEEEGA 441 P P + +I PL +PIK +GHL +L+G+LAP GAV KI+GKEG F G A+VF++E + Sbjct: 359 DPVKPSKESVIHPLDNPIKPSGHLCVLHGNLAPEGAVAKISGKEGKSFTGTAKVFDDEPS 418 Query: 442 FIEALERGEIKKGEKTVVVIRYEGPRGAPGMPEMLKPSSALMGYGLGKDVALLTDGRFSG 501 A++ EI+KG+ VVVIRY GP+G PGMPEMLKP+S ++G GLG DVAL+TDGRFSG Sbjct: 419 ANAAMKNKEIQKGD--VVVIRYVGPKGGPGMPEMLKPTSIIIGAGLGSDVALITDGRFSG 476 Query: 502 GSHGFLIGHIVPEAAEGGPIGLVRDGDEIIIDADNNKIDLLVSDKEMAQRKQSWVAPPPR 561 G+HGF++GH+ PEA GGPIGL++DGD I IDA++ +I + VS+ E A+RK++W Sbjct: 477 GTHGFVVGHVTPEAYLGGPIGLLKDGDVITIDAESLEIRVDVSEAEFAERKKNWKNKDLS 536 Query: 562 YTRGTLSKYAKLVSNASNGCVLD 584 + +GTL KY +LVS AS GCV D Sbjct: 537 HLQGTLKKYVQLVSTASEGCVTD 559 Lambda K H 0.315 0.134 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 1044 Number of extensions: 50 Number of successful extensions: 4 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 585 Length of database: 561 Length adjustment: 36 Effective length of query: 549 Effective length of database: 525 Effective search space: 288225 Effective search space used: 288225 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 53 (25.0 bits)
Align candidate Echvi_2055 Echvi_2055 (dihydroxy-acid dehydratase)
to HMM TIGR00110 (ilvD: dihydroxy-acid dehydratase (EC 4.2.1.9))
../bin/blast/fastacmd -i /tmp/list.28198.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.28198.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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