Align 3-isopropylmalate dehydratase large subunit; Alpha-IPM isomerase; IPMI; Isopropylmalate isomerase; EC 4.2.1.33 (characterized)
to candidate Echvi_2059 Echvi_2059 3-isopropylmalate dehydratase, large subunit
Query= SwissProt::Q7TXH6 (473 letters) >FitnessBrowser__Cola:Echvi_2059 Length = 465 Score = 513 bits (1321), Expect = e-150 Identities = 254/466 (54%), Positives = 326/466 (69%), Gaps = 2/466 (0%) Query: 7 EPRTLAEKIWDDHIVVSGGGCAPDLIYIDLHLVHEVTSPQAFDGLRLAGRRVRRPELTLA 66 E +TL +K+WD+H+V S G PD+ +ID H +HEVTSP AF L G V PE T+A Sbjct: 2 EKKTLFDKVWDEHVVKSVPG-GPDVFFIDKHFIHEVTSPVAFLNLENRGNNVLFPERTVA 60 Query: 67 TEDHNVPTVDIDQPIADPVSRTQVETLRRNCAEFGIRLHSMGDIEQGIVHVVGPQLGLTQ 126 T DHNVPT+D D+ I D +SR QVE LR NC+++GI LH +G GIVHV+GP+LG+TQ Sbjct: 61 TPDHNVPTIDQDKTIKDKLSRMQVEKLRDNCSKYGIELHDLGTDHHGIVHVIGPELGITQ 120 Query: 127 PGMTIVCGDSHTSTHGAFGALAMGIGTSEVEHVLATQTLPLRPFKTMAVNVDGRLPDGVS 186 PGMTIVCGDSHTSTHGAFGA+A GIGTSEVE V A+Q + K M + V+G L GV+ Sbjct: 121 PGMTIVCGDSHTSTHGAFGAIAFGIGTSEVEMVFASQCIMQSKPKRMRITVNGELGKGVT 180 Query: 187 AKDIILALIAKIGTGGGQGHVIEYRGSAIESLSMEGRMTICNMSIEAGARAGMVAPDETT 246 +KDIIL +I+KI GG G+ IEY GSAI+SLSME RMTICNMSIE GAR G++APDE T Sbjct: 181 SKDIILYIISKISASGGTGYFIEYAGSAIQSLSMEARMTICNMSIEMGARGGLIAPDEVT 240 Query: 247 YAFLRGRPHAPTGAQWDTALVYWQRLRTDVGAVFDTEVYLDAASLSPFVTWGTNPGQGVP 306 + +L+G+ HAP G WD A+ YW+ LRTD GA FD E DA + P +T+GTNPG G+ Sbjct: 241 FDYLKGKEHAPKGEDWDKAVEYWKSLRTDEGAEFDLEYTYDAEDIEPMITYGTNPGMGIK 300 Query: 307 LAAAVPDPQLMTDDAERQAAEKALAYMDLRPGTAMREIAVDAVFVGSCTNGRIEDLRVVA 366 + +P + M + + ++ K+L YM +PG ++ +D VFVGSCTNGRIED+R VA Sbjct: 301 IKDIIPTTEGM-EGSNKKTYLKSLDYMGFQPGEPIKGKKIDYVFVGSCTNGRIEDIRAVA 359 Query: 367 EVLRGRKVADGVRMLIVPGSMRVRAQAEAEGLGEIFTDAGAQWRQAGCSMCLGMNPDQLA 426 E ++G+K AD + IVPGS V +QA EGL I +AG + RQ GCS CL MN D++ Sbjct: 360 EFVKGKKKADNITAWIVPGSREVESQAIEEGLVSILEEAGFKLRQPGCSACLAMNDDKIP 419 Query: 427 SGERCAATSNRNFEGRQGAGGRTHLVSPAVAAATAVRGTLSSPADL 472 +G+ +TSNRNFEGRQG G RT L SP AA A+ G ++ P ++ Sbjct: 420 AGKYAVSTSNRNFEGRQGPGARTLLASPLTVAAVAITGEVADPREV 465 Lambda K H 0.319 0.135 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 637 Number of extensions: 22 Number of successful extensions: 3 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 473 Length of database: 465 Length adjustment: 33 Effective length of query: 440 Effective length of database: 432 Effective search space: 190080 Effective search space used: 190080 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 51 (24.3 bits)
Align candidate Echvi_2059 Echvi_2059 (3-isopropylmalate dehydratase, large subunit)
to HMM TIGR00170 (leuC: 3-isopropylmalate dehydratase, large subunit (EC 4.2.1.33))
../bin/blast/fastacmd -i /tmp/list.29713.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.29713.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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