Align Aspartate-semialdehyde dehydrogenase 2; ASA dehydrogenase 2; ASADH 2; Aspartate-beta-semialdehyde dehydrogenase 2; EC 1.2.1.11 (characterized)
to candidate Echvi_0713 Echvi_0713 aspartate-semialdehyde dehydrogenase (peptidoglycan organisms)
Query= SwissProt::P23247 (337 letters) >FitnessBrowser__Cola:Echvi_0713 Length = 329 Score = 285 bits (730), Expect = 9e-82 Identities = 161/330 (48%), Positives = 216/330 (65%), Gaps = 11/330 (3%) Query: 7 VAIFGATGAVGETMLEVLQEREFPVDELFLLASERSEGKTYRFNGKTVRVQNVEEFDWSQ 66 +A+ GATG VG +LEVL E FP DEL L+ASERS GK F K V + + + Sbjct: 3 LAVVGATGLVGSEILEVLAEHNFPFDELLLVASERSAGKKIAFKDKEYTVIGLAQAVSEK 62 Query: 67 VHIALFSAGGELSAKWAPIAAEAGVVVIDNTSHFRYDYDIPLVVPEVNPEAIAEFRNRNI 126 IA+FSAGG+ S +WAP AEAG +V+DN+S +R D LVVPE+N +++ + I Sbjct: 63 PDIAIFSAGGDTSKEWAPKFAEAGTIVVDNSSAWRMDPTKKLVVPEINAKSLK--IDDRI 120 Query: 127 IANPNCSTIQMLVALKPIYDAVGIERINVTTYQSVSGAGKAGIDELAGQTAKLLNGYPAE 186 IANPNCSTIQM++AL + D GI+R+ V+TYQSV+G+G +++L + A G E Sbjct: 121 IANPNCSTIQMVLALTKLRDRYGIKRVVVSTYQSVTGSGLKAVNQLQDERA----GKEGE 176 Query: 187 TNTFSQQIAFNCIPQIDQFMDNGYTKEEMKMVWETQKIFNDPSIMVNPTCVRVPVFYGHA 246 + +I N +P ID F DNGYTKEEMKM+ ET+KIF DPSI V T VR+PV GH+ Sbjct: 177 -KAYPHKIDLNVLPHIDVFQDNGYTKEEMKMINETKKIFEDPSIQVTATTVRIPVMGGHS 235 Query: 247 EAVHVETRAPIDAEQVMDMLEQTDGIEL---FRGADFPTQVRDAGGKDHVLVGRVRNDIS 303 E+V+VE + D E+V ++L T G+ + +P + +A KD V VGR+R D S Sbjct: 236 ESVNVEFKEDFDLEEVKELLAATPGVVVEDDVANNVYPMPM-NAHKKDEVFVGRLRRDES 294 Query: 304 HHSGINLWVVADNVRKGAATNAVQIAELLV 333 + +N+W+VADN+RKGAATNAVQIAE LV Sbjct: 295 QPNTLNMWIVADNLRKGAATNAVQIAEYLV 324 Lambda K H 0.319 0.135 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 285 Number of extensions: 8 Number of successful extensions: 4 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 337 Length of database: 329 Length adjustment: 28 Effective length of query: 309 Effective length of database: 301 Effective search space: 93009 Effective search space used: 93009 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 49 (23.5 bits)
Align candidate Echvi_0713 Echvi_0713 (aspartate-semialdehyde dehydrogenase (peptidoglycan organisms))
to HMM TIGR01296 (asd: aspartate-semialdehyde dehydrogenase (EC 1.2.1.11))
../bin/blast/fastacmd -i /tmp/list.4155.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.4155.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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