GapMind for Amino acid biosynthesis

 

Alignments for a candidate for proC in Echinicola vietnamensis KMM 6221, DSM 17526

Align Pyrroline-5-carboxylate reductase; P5C reductase; P5CR; PCA reductase; EC 1.5.1.2 (characterized)
to candidate Echvi_2479 Echvi_2479 pyrroline-5-carboxylate reductase

Query= SwissProt::Q9HH99
         (270 letters)



>FitnessBrowser__Cola:Echvi_2479
          Length = 265

 Score =  157 bits (396), Expect = 3e-43
 Identities = 89/264 (33%), Positives = 149/264 (56%), Gaps = 3/264 (1%)

Query: 1   MENQKIGFIGAGKMGSALMQGTIKAGIVTPENIGASDVYEPFLKDLQAKLGIRVSTDNAV 60
           M+N KI  IG G +G +++ G ++      +N+  +  +   L  LQ+ LG+ V+ DN  
Sbjct: 1   MKNLKIAIIGCGNLGLSIVNGLLETEGFEAKNLMVTKRHPENLSHLQS-LGVTVTADNKS 59

Query: 61  IVRESDILILAVKPQTLSSVLSNLKNEITSEK-LVISIAAGVPLSTYEDALLEGTRVVRV 119
             + +D++IL VKP  +  +L  +   ++ +K  +IS+A GV L      L   T + R 
Sbjct: 60  AAKAADLVILGVKPYNIPHILKEIAPVVSPDKQTIISLATGVTLEEMYQHLPSTTALYRA 119

Query: 120 MPNIAATVSEAASGIAPGKNATPEDLKAALEIFSAVGTAVQVPESLMDAVTGLSGSGPAF 179
           MPNIAA + E+ + I  G+N+TPE+      +F+++G ++ + E LM+A T L   G A+
Sbjct: 120 MPNIAADIQESITCIC-GQNSTPENEDIIKALFNSIGISIIIEEHLMEAATVLGACGIAY 178

Query: 180 IFPVIEAMADGAVLEGMDRKSALTLAAQTVLGAAKMALETGMHPGELKDMVTSPAGTTIQ 239
           +   + AM  G +  G D K+A T+  QTV GAA++ ++ G+HP    D VT+P G TI 
Sbjct: 179 VLRFMRAMTQGGIQIGFDAKTANTIVNQTVKGAAELLIKKGIHPEAAIDKVTTPKGCTIV 238

Query: 240 GIHSLEEAGIRAAFMNAVIRASER 263
           G++ +E  G  AA +  V+ + E+
Sbjct: 239 GLNEMEHHGFSAAMVKGVLASYEK 262


Lambda     K      H
   0.313    0.130    0.343 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 149
Number of extensions: 7
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 270
Length of database: 265
Length adjustment: 25
Effective length of query: 245
Effective length of database: 240
Effective search space:    58800
Effective search space used:    58800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.7 bits)

Align candidate Echvi_2479 Echvi_2479 (pyrroline-5-carboxylate reductase)
to HMM TIGR00112 (proC: pyrroline-5-carboxylate reductase (EC 1.5.1.2))

Software error:

../bin/blast/fastacmd -i /tmp/list.24846.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.24846.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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