Align Pyrroline-5-carboxylate reductase; P5C reductase; P5CR; PCA reductase; EC 1.5.1.2 (characterized)
to candidate Echvi_2479 Echvi_2479 pyrroline-5-carboxylate reductase
Query= SwissProt::Q9HH99 (270 letters) >FitnessBrowser__Cola:Echvi_2479 Length = 265 Score = 157 bits (396), Expect = 3e-43 Identities = 89/264 (33%), Positives = 149/264 (56%), Gaps = 3/264 (1%) Query: 1 MENQKIGFIGAGKMGSALMQGTIKAGIVTPENIGASDVYEPFLKDLQAKLGIRVSTDNAV 60 M+N KI IG G +G +++ G ++ +N+ + + L LQ+ LG+ V+ DN Sbjct: 1 MKNLKIAIIGCGNLGLSIVNGLLETEGFEAKNLMVTKRHPENLSHLQS-LGVTVTADNKS 59 Query: 61 IVRESDILILAVKPQTLSSVLSNLKNEITSEK-LVISIAAGVPLSTYEDALLEGTRVVRV 119 + +D++IL VKP + +L + ++ +K +IS+A GV L L T + R Sbjct: 60 AAKAADLVILGVKPYNIPHILKEIAPVVSPDKQTIISLATGVTLEEMYQHLPSTTALYRA 119 Query: 120 MPNIAATVSEAASGIAPGKNATPEDLKAALEIFSAVGTAVQVPESLMDAVTGLSGSGPAF 179 MPNIAA + E+ + I G+N+TPE+ +F+++G ++ + E LM+A T L G A+ Sbjct: 120 MPNIAADIQESITCIC-GQNSTPENEDIIKALFNSIGISIIIEEHLMEAATVLGACGIAY 178 Query: 180 IFPVIEAMADGAVLEGMDRKSALTLAAQTVLGAAKMALETGMHPGELKDMVTSPAGTTIQ 239 + + AM G + G D K+A T+ QTV GAA++ ++ G+HP D VT+P G TI Sbjct: 179 VLRFMRAMTQGGIQIGFDAKTANTIVNQTVKGAAELLIKKGIHPEAAIDKVTTPKGCTIV 238 Query: 240 GIHSLEEAGIRAAFMNAVIRASER 263 G++ +E G AA + V+ + E+ Sbjct: 239 GLNEMEHHGFSAAMVKGVLASYEK 262 Lambda K H 0.313 0.130 0.343 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 149 Number of extensions: 7 Number of successful extensions: 4 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 270 Length of database: 265 Length adjustment: 25 Effective length of query: 245 Effective length of database: 240 Effective search space: 58800 Effective search space used: 58800 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 47 (22.7 bits)
Align candidate Echvi_2479 Echvi_2479 (pyrroline-5-carboxylate reductase)
to HMM TIGR00112 (proC: pyrroline-5-carboxylate reductase (EC 1.5.1.2))
../bin/blast/fastacmd -i /tmp/list.24846.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.24846.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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