GapMind for Amino acid biosynthesis

 

Alignments for a candidate for argC in Cupriavidus basilensis 4G11

Align N-acetyl-gamma-glutamyl-phosphate reductase; AGPR; EC 1.2.1.38; N-acetyl-glutamate semialdehyde dehydrogenase; NAGSA dehydrogenase (uncharacterized)
to candidate RR42_RS16645 RR42_RS16645 n-acetyl-gamma-glutamyl-phosphate reductase

Query= curated2:B1K264
         (313 letters)



>FitnessBrowser__Cup4G11:RR42_RS16645
          Length = 309

 Score =  465 bits (1196), Expect = e-136
 Identities = 237/307 (77%), Positives = 252/307 (82%), Gaps = 1/307 (0%)

Query: 1   MSFPTVFIDGDQGTTGLQIHARLRDRTDVRLLTLPAAERKDAARRADALNACDIAILCLP 60
           MS P VFIDGDQGTTGLQIH RLRDRTD+RL TL AAERKD   RA A+NACDIAILCLP
Sbjct: 1   MSSPVVFIDGDQGTTGLQIHERLRDRTDLRLFTLAAAERKDPRCRAQAINACDIAILCLP 60

Query: 61  DAAAREAVGFIRNPAVRVIDASSAHRTQPDWVYGFPEMADGHAHDIAHAKRVTNPGCYPT 120
           DAAAREAV  I NPAVRVIDASSAHRTQPDW YGFPEM  G A  IA+A+RVTNPGCYPT
Sbjct: 61  DAAAREAVDAIVNPAVRVIDASSAHRTQPDWTYGFPEMTQGQAERIANARRVTNPGCYPT 120

Query: 121 GAIGLLRPLLQAGLLPRDYPVSIHAVSGYSGGGRAAVDAFESGDAAARALPLQVYGLALE 180
           GAIGLLRPLLQAGL+P DYPVSIHAVSGYSG GRA V+  E G  A  A   QVYGLAL 
Sbjct: 121 GAIGLLRPLLQAGLIPGDYPVSIHAVSGYSGRGRAGVEEHE-GQGAVNAPAYQVYGLALA 179

Query: 181 HKHVPEIRQHAGLAHRPFFVPAYGAYRQGIVLTIPIELRLLPAGVTGERLHACLAHHYAD 240
           HKH PEI+ HAGLA RP FVPAYGA+RQGIVLT+P+ LRLLP GV G  LHACLA HYAD
Sbjct: 180 HKHPPEIQLHAGLAQRPIFVPAYGAFRQGIVLTVPLALRLLPPGVDGAALHACLARHYAD 239

Query: 241 ARHVDVMPLADAAAATHLDPQALNGTNDLRLGVLVNADGGQVLLSAVFDNLGKGASGAAV 300
           A HV V+PL ++ A  HLDPQALN TND+ L V  NA+ G VLLSAVFDNLGKGASGAAV
Sbjct: 240 AAHVRVVPLDESCALQHLDPQALNATNDMHLSVFPNAEHGHVLLSAVFDNLGKGASGAAV 299

Query: 301 QNLDLML 307
           QNLDLML
Sbjct: 300 QNLDLML 306


Lambda     K      H
   0.322    0.138    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 408
Number of extensions: 15
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 309
Length adjustment: 27
Effective length of query: 286
Effective length of database: 282
Effective search space:    80652
Effective search space used:    80652
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)

Align candidate RR42_RS16645 RR42_RS16645 (n-acetyl-gamma-glutamyl-phosphate reductase)
to HMM TIGR01851 (argC: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38))

Software error:

../bin/blast/fastacmd -i /tmp/list.24906.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.24906.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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