Align N-acetyl-gamma-glutamyl-phosphate reductase; AGPR; EC 1.2.1.38; N-acetyl-glutamate semialdehyde dehydrogenase; NAGSA dehydrogenase (uncharacterized)
to candidate RR42_RS16645 RR42_RS16645 n-acetyl-gamma-glutamyl-phosphate reductase
Query= curated2:B1K264 (313 letters) >FitnessBrowser__Cup4G11:RR42_RS16645 Length = 309 Score = 465 bits (1196), Expect = e-136 Identities = 237/307 (77%), Positives = 252/307 (82%), Gaps = 1/307 (0%) Query: 1 MSFPTVFIDGDQGTTGLQIHARLRDRTDVRLLTLPAAERKDAARRADALNACDIAILCLP 60 MS P VFIDGDQGTTGLQIH RLRDRTD+RL TL AAERKD RA A+NACDIAILCLP Sbjct: 1 MSSPVVFIDGDQGTTGLQIHERLRDRTDLRLFTLAAAERKDPRCRAQAINACDIAILCLP 60 Query: 61 DAAAREAVGFIRNPAVRVIDASSAHRTQPDWVYGFPEMADGHAHDIAHAKRVTNPGCYPT 120 DAAAREAV I NPAVRVIDASSAHRTQPDW YGFPEM G A IA+A+RVTNPGCYPT Sbjct: 61 DAAAREAVDAIVNPAVRVIDASSAHRTQPDWTYGFPEMTQGQAERIANARRVTNPGCYPT 120 Query: 121 GAIGLLRPLLQAGLLPRDYPVSIHAVSGYSGGGRAAVDAFESGDAAARALPLQVYGLALE 180 GAIGLLRPLLQAGL+P DYPVSIHAVSGYSG GRA V+ E G A A QVYGLAL Sbjct: 121 GAIGLLRPLLQAGLIPGDYPVSIHAVSGYSGRGRAGVEEHE-GQGAVNAPAYQVYGLALA 179 Query: 181 HKHVPEIRQHAGLAHRPFFVPAYGAYRQGIVLTIPIELRLLPAGVTGERLHACLAHHYAD 240 HKH PEI+ HAGLA RP FVPAYGA+RQGIVLT+P+ LRLLP GV G LHACLA HYAD Sbjct: 180 HKHPPEIQLHAGLAQRPIFVPAYGAFRQGIVLTVPLALRLLPPGVDGAALHACLARHYAD 239 Query: 241 ARHVDVMPLADAAAATHLDPQALNGTNDLRLGVLVNADGGQVLLSAVFDNLGKGASGAAV 300 A HV V+PL ++ A HLDPQALN TND+ L V NA+ G VLLSAVFDNLGKGASGAAV Sbjct: 240 AAHVRVVPLDESCALQHLDPQALNATNDMHLSVFPNAEHGHVLLSAVFDNLGKGASGAAV 299 Query: 301 QNLDLML 307 QNLDLML Sbjct: 300 QNLDLML 306 Lambda K H 0.322 0.138 0.417 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 408 Number of extensions: 15 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 313 Length of database: 309 Length adjustment: 27 Effective length of query: 286 Effective length of database: 282 Effective search space: 80652 Effective search space used: 80652 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 48 (23.1 bits)
Align candidate RR42_RS16645 RR42_RS16645 (n-acetyl-gamma-glutamyl-phosphate reductase)
to HMM TIGR01851 (argC: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38))
../bin/blast/fastacmd -i /tmp/list.24906.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.24906.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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