Align dihydroxyacid dehydratase (EC 4.2.1.9) (characterized)
to candidate RR42_RS16210 RR42_RS16210 dihydroxy-acid dehydratase
Query= metacyc::MONOMER-18815 (557 letters) >FitnessBrowser__Cup4G11:RR42_RS16210 Length = 557 Score = 1065 bits (2754), Expect = 0.0 Identities = 529/557 (94%), Positives = 552/557 (99%) Query: 1 MAFNKRSQNITQGVARSPNRSMYYALGYKKEDFDKPMVGIANGHSTITPCNAGLQRLADA 60 MA+NKRSQ+ITQGVARSPNRSMYYALGYKKEDFDKPMVGIANGHSTITPCN+GLQRLADA Sbjct: 1 MAYNKRSQHITQGVARSPNRSMYYALGYKKEDFDKPMVGIANGHSTITPCNSGLQRLADA 60 Query: 61 AIDAIKASDANPQVFGTPTISDGMSMGTEGMKYSLISREVIADCIETAAQGQWMDGVVVI 120 A+ AIKASDANPQ+FGTPTISDGMSMGTEGMKYSLISREVIADCIETA QGQWMDGVVVI Sbjct: 61 AVAAIKASDANPQIFGTPTISDGMSMGTEGMKYSLISREVIADCIETATQGQWMDGVVVI 120 Query: 121 GGCDKNMPGGMIALARTNVPGIYVYGGTIKPGNWKGKDLTIVSSFEAVGEFTAGRMSQED 180 GGCDKNMPGGMIALARTNVPGIYVYGGTIKPGNWKGKDLTIVSSFEAVGEFTAGR+SQED Sbjct: 121 GGCDKNMPGGMIALARTNVPGIYVYGGTIKPGNWKGKDLTIVSSFEAVGEFTAGRLSQED 180 Query: 181 FEGVEKNACPSTGSCGGMYTANTMSSSFEALGMSLLYSSTMANPDQEKVDSAAESARVLV 240 FEGVEKNACPS+GSCGGMYTANTMSSSFEALGMSLLYSSTMANPDQEKVDSAAESARVLV Sbjct: 181 FEGVEKNACPSSGSCGGMYTANTMSSSFEALGMSLLYSSTMANPDQEKVDSAAESARVLV 240 Query: 241 EAIKQDIKPRDIITRKSIENAVALIMATGGSTNAVLHYLAIAHAAEVEWTIDDFERIRRK 300 EAIK+DIKPRDIITRKSIENAVALIMATGGSTNAVLHYLAIAH+AEVEW+IDDFERIRRK Sbjct: 241 EAIKKDIKPRDIITRKSIENAVALIMATGGSTNAVLHYLAIAHSAEVEWSIDDFERIRRK 300 Query: 301 VPVICNLKPSGQYVATDLHKAGGIPQVMKILLKAGMLHGDCLTITGRTLAEELENVPDTP 360 VPVICNLKPSGQYVATDLH+AGGIPQVMKILLKAG++HGDCLTITGRTLAEELENVPDTP Sbjct: 301 VPVICNLKPSGQYVATDLHRAGGIPQVMKILLKAGLMHGDCLTITGRTLAEELENVPDTP 360 Query: 361 RADQDVILPIEKALYAEGHLAILKGNLAEEGAVAKITGLKNPVITGPARVFEDEQSAMEA 420 RADQDVI+PIEKALY EGHLAILKGNLA+EGAVAKITGLKNPVITGPARVFEDEQSAM+A Sbjct: 361 RADQDVIMPIEKALYKEGHLAILKGNLAQEGAVAKITGLKNPVITGPARVFEDEQSAMDA 420 Query: 421 ILADKINAGDILVLRYLGPKGGPGMPEMLAPTSAIIGKGLGESVGFITDGRFSGGTWGMV 480 ILADKINAGDILVLRYLGPKGGPGMPEMLAPTSAIIGKGLGESVGFITDGRFSGGTWGMV Sbjct: 421 ILADKINAGDILVLRYLGPKGGPGMPEMLAPTSAIIGKGLGESVGFITDGRFSGGTWGMV 480 Query: 481 VGHVAPEAYVGGTIALVQEGDSITIDAHKLLLQLNVADEELARRRANWKQPAPRYTRGVL 540 VGHVAPEA+VGG IALVQEGDS+TIDAHKLLL+LNV++EELA+RRA WKQPAPRYTRGVL Sbjct: 481 VGHVAPEAHVGGNIALVQEGDSVTIDAHKLLLELNVSEEELAKRRAAWKQPAPRYTRGVL 540 Query: 541 AKFSKLASTASKGAVTD 557 AKF+KLASTASKGAVTD Sbjct: 541 AKFAKLASTASKGAVTD 557 Lambda K H 0.316 0.133 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 1203 Number of extensions: 34 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 557 Length of database: 557 Length adjustment: 36 Effective length of query: 521 Effective length of database: 521 Effective search space: 271441 Effective search space used: 271441 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 53 (25.0 bits)
Align candidate RR42_RS16210 RR42_RS16210 (dihydroxy-acid dehydratase)
to HMM TIGR00110 (ilvD: dihydroxy-acid dehydratase (EC 4.2.1.9))
../bin/blast/fastacmd -i /tmp/list.12549.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.12549.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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