Align 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; Tetrahydrodipicolinate N-succinyltransferase; THDP succinyltransferase; THP succinyltransferase; Tetrahydropicolinate succinylase; EC 2.3.1.117 (characterized)
to candidate RR42_RS11935 RR42_RS11935 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase
Query= SwissProt::P56220 (274 letters) >FitnessBrowser__Cup4G11:RR42_RS11935 Length = 275 Score = 407 bits (1046), Expect = e-118 Identities = 205/271 (75%), Positives = 229/271 (84%), Gaps = 1/271 (0%) Query: 2 QQLQNVIESAFERRADITPANVDTVTREAVNQVIGLLDSGALRVAEKIDGQWVTHQWLKK 61 Q LQ +I+ A+E RA ++P + REAV VIG LD+GALRVAEK +W+ +QW+KK Sbjct: 3 QALQALIDQAWEDRASLSPKSAPNDIREAVANVIGQLDTGALRVAEKQGKEWIVNQWIKK 62 Query: 62 AVLLSFRINDNKVMD-GAETRYYDKVPMKFADYDEARFQKEGFRVVPPATVRQGAFIARN 120 AVLLSFR+ DN M G ++YDKVP KFA++ F K GFRVVPPA R+G+FIA+N Sbjct: 63 AVLLSFRLEDNAPMSAGGFAQFYDKVPTKFANWTADDFAKGGFRVVPPAVARRGSFIAKN 122 Query: 121 TVLMPSYVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTIIED 180 VLMPSYVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANP IIED Sbjct: 123 AVLMPSYVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPVIIED 182 Query: 181 NCFIGARSEVVEGVIVEEGSVISMGVYLGQSTRIYDRETGEIHYGRVPAGSVVVSGNLPS 240 NCFIGARSEVVEGVIVEE SVISMGVYLGQST+IYDRETGEIHYGRVPAGSVVV+GNLPS Sbjct: 183 NCFIGARSEVVEGVIVEENSVISMGVYLGQSTKIYDRETGEIHYGRVPAGSVVVAGNLPS 242 Query: 241 KDGSYSLYCAVIVKKVDAKTRGKVGINELLR 271 KDG YSLYCAVIVKKVDA+TR K +N+LLR Sbjct: 243 KDGKYSLYCAVIVKKVDAQTRAKTSLNDLLR 273 Lambda K H 0.318 0.136 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 320 Number of extensions: 5 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 274 Length of database: 275 Length adjustment: 25 Effective length of query: 249 Effective length of database: 250 Effective search space: 62250 Effective search space used: 62250 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 47 (22.7 bits)
Align candidate RR42_RS11935 RR42_RS11935 (2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase)
to HMM TIGR00965 (dapD: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (EC 2.3.1.117))
../bin/blast/fastacmd -i /tmp/list.16253.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.16253.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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