Align Succinyl-diaminopimelate desuccinylase; SDAP desuccinylase; N-succinyl-LL-2,6-diaminoheptanedioate amidohydrolase; EC 3.5.1.18 (characterized)
to candidate RR42_RS11950 RR42_RS11950 succinyl-diaminopimelate desuccinylase
Query= SwissProt::Q9JYL2 (381 letters) >FitnessBrowser__Cup4G11:RR42_RS11950 Length = 383 Score = 469 bits (1206), Expect = e-137 Identities = 235/380 (61%), Positives = 282/380 (74%), Gaps = 8/380 (2%) Query: 6 SLELAKELISRPSVTPDDRDCQKLLAERLHKIGFAAEELHFGD----TKNIW-LRRGTKA 60 +L L ++LI R SVTP D CQ +L RL +GFA E + G N+W ++RGT+ Sbjct: 4 TLALTEDLIRRRSVTPADEGCQAVLETRLKALGFACEAIVSGPDDFRVTNLWAVKRGTRG 63 Query: 61 P---VVCFAGHTDVVPTGPVEKWDSPPFEPAERDGRLYGRGAADMKTSIACFVTACERFV 117 ++ FAGHTDVVPTGP+E+W S PF P+ RDG+LYGRGAADMKTSIA FV A E FV Sbjct: 64 QDGKLLAFAGHTDVVPTGPLEQWGSDPFLPSHRDGKLYGRGAADMKTSIAGFVVAVEEFV 123 Query: 118 AKHPNHQGSIALLITSDEEGDALDGTTKVVDVLKARDELIDYCIVGEPTAVDKLGDMIKN 177 HP+H GSIA LITSDEEG A DGT KVV LKAR E +DYC++GEPT+VD LGDM+KN Sbjct: 124 QAHPDHAGSIAFLITSDEEGPAHDGTVKVVQALKARGERLDYCVIGEPTSVDTLGDMVKN 183 Query: 178 GRRGSLSGNLTVKGKQGHIAYPHLAINPVHTFAPALLELTQEVWDEGNEYFPPTSFQISN 237 GRRGSLSG LTVKG QGHIAYPHLA NP+H APAL +L E WDEGNEYFP TS+Q+SN Sbjct: 184 GRRGSLSGKLTVKGVQGHIAYPHLARNPIHLAAPALTDLVNERWDEGNEYFPATSWQMSN 243 Query: 238 INGGTGATNVIPGELNVKFNFRFSTESTEAGLKQRVHAILDKHGVQYDLQWSCSGQPFLT 297 I+GGTGATNVIPG + V FNFRFST ST GLK RVHAIL++H + YDL W+ G+PFLT Sbjct: 244 IHGGTGATNVIPGHVTVDFNFRFSTASTPDGLKARVHAILERHQLDYDLDWTLGGEPFLT 303 Query: 298 QAGKLTDVARAAIAETCGIEAELSTTGGTSDGRFIKAIAQELIELGPSNATIHQINENVR 357 G L++ AIA G++ ELSTTGGTSDGRFI I ++IE GP NA+IH+I+E+V Sbjct: 304 ARGDLSEALAGAIAAETGVKTELSTTGGTSDGRFIAKICPQVIEFGPPNASIHKIDEHVE 363 Query: 358 LNDIPKLSAVYEGILARLLA 377 + I L +Y G+L RL+A Sbjct: 364 VRFIEPLKNIYRGVLERLIA 383 Lambda K H 0.317 0.135 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 490 Number of extensions: 18 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 381 Length of database: 383 Length adjustment: 30 Effective length of query: 351 Effective length of database: 353 Effective search space: 123903 Effective search space used: 123903 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 50 (23.9 bits)
Align candidate RR42_RS11950 RR42_RS11950 (succinyl-diaminopimelate desuccinylase)
to HMM TIGR01246 (dapE: succinyl-diaminopimelate desuccinylase (EC 3.5.1.18))
../bin/blast/fastacmd -i /tmp/list.30611.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.30611.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.