GapMind for Amino acid biosynthesis

 

Alignments for a candidate for argC in Cupriavidus basilensis 4G11

Align N-acetyl-gamma-glutamyl-phosphate reductase; AGPR; EC 1.2.1.38; N-acetyl-glutamate semialdehyde dehydrogenase; NAGSA dehydrogenase (uncharacterized)
to candidate RR42_RS01210 RR42_RS01210 n-acetyl-gamma-glutamyl-phosphate reductase

Query= curated2:Q8Y339
         (337 letters)



>FitnessBrowser__Cup4G11:RR42_RS01210
          Length = 315

 Score =  486 bits (1251), Expect = e-142
 Identities = 234/313 (74%), Positives = 271/313 (86%)

Query: 1   MAFKVFVDGQEGTTGLRLLDYLSQRDDIELLRIAEDRRKDPAERAKFLNAADVAFLCLPD 60
           M FKVFVDGQEGTTGLRLLDYLS R D+ELLRIA+D+RKDPAERA+FLNAADVAFLCLPD
Sbjct: 1   MVFKVFVDGQEGTTGLRLLDYLSGRSDVELLRIADDKRKDPAERARFLNAADVAFLCLPD 60

Query: 61  VASREAVSLVDNPNTCIIDASTAFRTSDDWAYGLPELAPGQRERLRNSKRIAVPGCHASA 120
           VASREAV+LV NP+TC+IDASTAFRT+D WAYGLPEL  GQRE++R SKRIAVPGCHASA
Sbjct: 61  VASREAVALVTNPDTCVIDASTAFRTTDSWAYGLPELTRGQREKIRTSKRIAVPGCHASA 120

Query: 121 FVLLMRPLVEAGIVPADYPITAFSLTGYSGGGKKMIADYLAADNPKLQSPRPYALALTHK 180
           F++ +RPLVEAG++ ADYP++AFSLTGYSGGGK+MIA++ A  NPKL SPRPY+L L HK
Sbjct: 121 FLMAVRPLVEAGVMQADYPVSAFSLTGYSGGGKQMIAEFEAGGNPKLDSPRPYSLGLAHK 180

Query: 181 HLPEMRVQSKLALPPIFTPVVGNFLKGLAVTIGLHPQHLASKVSPADIAKVFADYYQGEQ 240
           HLPEMRVQ+ LA  PIF P+VGNFLKGLAVT+ ++P  LA KV+P  IA ++  +Y+GEQ
Sbjct: 181 HLPEMRVQAGLAQAPIFNPIVGNFLKGLAVTVPVYPDRLARKVTPEQIADLYRKHYEGEQ 240

Query: 241 FIRVAPADNVETLDNGFFDVQGANDTNRADLFVFGSDERMVVTARLDNLGKGAAGAAVQC 300
           F+RV P  +   LD GFFDVQ +NDTNR DLFVFGS ER+V+ ARLDNLGKGAAGAAVQC
Sbjct: 241 FVRVMPVGDEANLDGGFFDVQASNDTNRVDLFVFGSAERIVLMARLDNLGKGAAGAAVQC 300

Query: 301 MNVHLGVDEATSL 313
           MNVH+G DEAT L
Sbjct: 301 MNVHVGADEATGL 313


Lambda     K      H
   0.320    0.136    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 402
Number of extensions: 11
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 337
Length of database: 315
Length adjustment: 28
Effective length of query: 309
Effective length of database: 287
Effective search space:    88683
Effective search space used:    88683
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)

Align candidate RR42_RS01210 RR42_RS01210 (n-acetyl-gamma-glutamyl-phosphate reductase)
to HMM TIGR01851 (argC: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38))

Software error:

../bin/blast/fastacmd -i /tmp/list.22360.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.22360.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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