Align acetylglutamate kinase (EC 2.7.2.8) (characterized)
to candidate 3606894 Dshi_0324 acetylglutamate kinase (RefSeq)
Query= BRENDA::Q9HTN2 (301 letters) >FitnessBrowser__Dino:3606894 Length = 287 Score = 288 bits (736), Expect = 1e-82 Identities = 149/291 (51%), Positives = 198/291 (68%), Gaps = 13/291 (4%) Query: 5 RDDAAQVAKVLSEALPYIRRFVGKTLVIKYGGNAMESEELKAGFARDVVLMKAVGINPVV 64 + D A+ LSEA+P++RR+ +VIK+GG+AM E A FARD+VLM+ VG+NPV+ Sbjct: 7 KSDWIATARTLSEAVPFLRRYDDAIVVIKFGGHAMGDAEAMASFARDIVLMRQVGVNPVI 66 Query: 65 VHGGGPQIGDLLKRLSIESHFIDGMRVTDAATMDVVEMVLGGQVNKDIVNLINRHGGSAI 124 VHGGGP I +L +L I S F++G RVTDAAT++VVEMVL G VNK IV INR GG AI Sbjct: 67 VHGGGPMINAMLAKLDINSDFVNGKRVTDAATIEVVEMVLSGLVNKRIVQAINREGGRAI 126 Query: 125 GLTGKDAELIRAKKLTVTRQTPEMTKPEIIDIGHVGEVTGVNVGLLNMLVKGDFIPVIAP 184 GL+GKDA LI + P +G VGE V L LV+ + IPVIAP Sbjct: 127 GLSGKDANLI-------------VCDPADPALGFVGEPVEVTPDTLLQLVRSEIIPVIAP 173 Query: 185 IGVGSNGESYNINADLVAGKVAEALKAEKLMLLTNIAGLMDKQGQVLTGLSTEQVNELIA 244 IG G GE++NIN D AG +A ALKA++L+LLT+++G+ D QG+V+T L+ E + E+ A Sbjct: 174 IGTGREGETFNINGDTAAGAIAAALKADRLLLLTDVSGVKDAQGKVVTELTVENIEEMTA 233 Query: 245 DGTIYGGMLPKIRCALEAVQGGVTSAHIIDGRVPNAVLLEIFTDSGVGTLI 295 G I GGM+PK + A++GGV +A I+DGR PNA LLE+FT+ G G++I Sbjct: 234 AGVIAGGMIPKTETCVTAIRGGVRAAVILDGRAPNACLLELFTEHGAGSII 284 Lambda K H 0.318 0.138 0.381 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 274 Number of extensions: 11 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 301 Length of database: 287 Length adjustment: 26 Effective length of query: 275 Effective length of database: 261 Effective search space: 71775 Effective search space used: 71775 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 48 (23.1 bits)
Align candidate 3606894 Dshi_0324 (acetylglutamate kinase (RefSeq))
to HMM TIGR00761 (argB: acetylglutamate kinase (EC 2.7.2.8))
../bin/blast/fastacmd -i /tmp/list.29263.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.29263.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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