Align argininosuccinate lyase (EC 4.3.2.1) (characterized)
to candidate 3609679 Dshi_3062 argininosuccinate lyase (RefSeq)
Query= BRENDA::Q8DVX5 (460 letters) >FitnessBrowser__Dino:3609679 Length = 463 Score = 438 bits (1127), Expect = e-127 Identities = 232/459 (50%), Positives = 301/459 (65%), Gaps = 1/459 (0%) Query: 3 TKNHKLWGGRFEAGLAQWVEEFGASISFDQKLAEFDLKGSIAHVTMLGEKGIISQEDAAT 62 TK++ +WGGRF AG +E ASI FD++LA D+ GS AH ML ++GI+S +DA Sbjct: 4 TKSNAMWGGRFAAGPDAIMEAINASIGFDRRLARQDIDGSRAHAAMLAQQGILSSKDAEA 63 Query: 63 IKAGLEDLLEEYKAGQLKFDVSNEDIHMNMESLLTAKIGPVAGKLHTARSRNDQVATDMH 122 I+ GL +L E + GQ F + EDIHMN+E+ L IG AG+LHT RSRNDQVATD Sbjct: 64 IREGLLTVLSEIETGQFAFSAALEDIHMNVEARLKELIGEPAGRLHTGRSRNDQVATDFK 123 Query: 123 LYLKAKLDEVIEKLANLRTVLVDLADKHVHTIMPGYTHLQHAQPISFGHHLMAYYNMFTR 182 L+++ +LD L L L+ A+ +MPG+THLQ AQP+++GHH+MAY MF R Sbjct: 124 LWVRDQLDAADAGLLALLRALLAQAEAGADWVMPGFTHLQTAQPVTWGHHMMAYVEMFAR 183 Query: 183 DSERFIFNVKHTDLSPLGAAALAGTTFPIDREMTAQLMGFAEPYSNSLDAVSDRDFILEF 242 D R + PLGAAALAGT+FP+DR+ TAQ +GF P +NSLDAVSDRDF LEF Sbjct: 184 DRGRMQDARARMNECPLGAAALAGTSFPLDRDATAQALGFDRPAANSLDAVSDRDFALEF 243 Query: 243 LSNASILMMHMSRMCEEVISWCSHEYQFVTLSDTFSTGSSIMPQKKNPDMAELIRGKSGR 302 L+ ASI MH+SRM EE++ W S +++FVTLSD FSTGSSIMPQKKNPD AELIR K GR Sbjct: 244 LAAASICAMHLSRMAEELVIWSSAQFRFVTLSDRFSTGSSIMPQKKNPDAAELIRAKIGR 303 Query: 303 VYANLFGLLTVMKALPLAYNKDLQEDKEGMFDTAETITVALDILAGMLSSMIVNDKHMAE 362 + LLTVMK LPLAY+KD+QEDKE +FD A+T+ +AL + GM+ M N + + Sbjct: 304 IVGANVALLTVMKGLPLAYSKDMQEDKEQVFDAADTLMLALAAMEGMVRDMTANRASLED 363 Query: 363 STQKDFSNATELADYLASK-GMPFRQAHEIVGKLILECSKNGHYLQDVPLERYQTISDLI 421 + FS AT+LAD+L + +PFR AH + G L+ G L D+ L Q++ I Sbjct: 364 AAASGFSTATDLADWLVRELNLPFRDAHHVTGTLVAMAEAKGCDLPDLSLAEMQSVHGAI 423 Query: 422 EEDVYETLKSHTAVERRHSLGGTGFEQVKWQIAEAKKAL 460 DV+E L H +V R S GGT QV+ Q+A K+ L Sbjct: 424 RADVFEVLGVHNSVASRTSYGGTAPSQVRAQVARWKERL 462 Lambda K H 0.318 0.132 0.378 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 558 Number of extensions: 20 Number of successful extensions: 3 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 460 Length of database: 463 Length adjustment: 33 Effective length of query: 427 Effective length of database: 430 Effective search space: 183610 Effective search space used: 183610 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 51 (24.3 bits)
Align candidate 3609679 Dshi_3062 (argininosuccinate lyase (RefSeq))
to HMM TIGR00838 (argH: argininosuccinate lyase (EC 4.3.2.1))
../bin/blast/fastacmd -i /tmp/list.4702.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.4702.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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