Align Carbamoyl-phosphate synthase large chain, chloroplastic; Carbamoyl-phosphate synthetase ammonia chain; Protein VENOSA 6; EC 6.3.5.5 (characterized)
to candidate 3609253 Dshi_2639 carbamoyl-phosphate synthase, large subunit (RefSeq)
Query= SwissProt::Q42601 (1187 letters) >FitnessBrowser__Dino:3609253 Length = 1105 Score = 1178 bits (3047), Expect = 0.0 Identities = 627/1120 (55%), Positives = 795/1120 (70%), Gaps = 57/1120 (5%) Query: 94 KRTDLKKIMILGAGPIVIGQACEFDYSGTQACKALREEGYEVILINSNPATIMTDPETAN 153 KRTD+K IMI+GAGPI+IGQACEFDYSG QACKALREEGY VIL+NSNPATIMTDP A+ Sbjct: 3 KRTDIKSIMIIGAGPIIIGQACEFDYSGAQACKALREEGYRVILVNSNPATIMTDPGLAD 62 Query: 154 RTYIAPMTPELVEQVIEKERPDALLPTMGGQTALNLAVALAESGALEKYGVELIGAKLGA 213 TYI P+TPE+V ++IEKERPDALLPTMGGQT LN ++AL E G L KYGVE+IGAK A Sbjct: 63 ATYIEPITPEIVAKIIEKERPDALLPTMGGQTGLNTSLALEEMGVLAKYGVEMIGAKREA 122 Query: 214 IKKAEDRELFKDAMKNIGLKTPPSGIGTTLDECFDIAEKIGEFPLIIRPAFTLGGTGGGI 273 I+ AEDR+LF++AM +G++ P + I TT+DEC + IG P IIRPAFTLGGTGGG+ Sbjct: 123 IEMAEDRKLFREAMDRLGIENPRATIATTMDECMAALDDIG-LPAIIRPAFTLGGTGGGV 181 Query: 274 AYNKEEFESICKSGLAASATSQVLVEKSLLGWKEYELEVMRDLADNVVIICSIENIDPMG 333 AYN++++E CKSGL AS +Q+L+++SLLGWKE+E+EV+RD ADN +I+C+IEN+DPMG Sbjct: 182 AYNRDDYEHFCKSGLDASPVNQILIDESLLGWKEFEMEVVRDKADNAIIVCAIENVDPMG 241 Query: 334 VHTGDSITVAPAQTLTDREYQRLRDYSIAIIREIGVECGGSNVQFAVNPVDGEVMIIEMN 393 VHTGDSITVAPA TLTD+EYQ +R+ SIA++REIGVE GGSNVQ+AVNP DG +++IEMN Sbjct: 242 VHTGDSITVAPALTLTDKEYQIMRNGSIAVLREIGVETGGSNVQWAVNPADGRMVVIEMN 301 Query: 394 PRVSRSSALASKATGFPIAKMAAKLSVGYTLDQIPNDITRKTPASFEPSIDYVVTKIPRF 453 PRVSRSSALASKATGFPIAK+AAKL+VGYTLD++ NDIT+ TPASFEP+IDYVVTKIPRF Sbjct: 302 PRVSRSSALASKATGFPIAKIAAKLAVGYTLDELDNDITKVTPASFEPTIDYVVTKIPRF 361 Query: 454 AFEKFPGSQPLLTTQMKSVGESMALGRTFQESFQKALRSLECGFSGWGCAKIKELDWDWD 513 AFEKFPG++P LTT MKSVGE+M++GRTF ES QKAL S+E G +G+ I + D Sbjct: 362 AFEKFPGAEPNLTTAMKSVGEAMSIGRTFHESVQKALASMETGLTGFDEIAIPGISADHR 421 Query: 514 Q-------LKYSLRVPNPDRIHAIYAAMKKGMKIDEIYELSMVDKWFLTQLKELVDVEQY 566 + +L PDR+ I AM+ G+ DEI + D WFL +++E+V+ E Sbjct: 422 SDAPDTAAVVKALARQTPDRLRVIAQAMRHGLSDDEIQAATSYDPWFLARIREIVETEAQ 481 Query: 567 LMSGTLSEITKEDLYEVKKRGFSDKQIAFATKTTEEEVRTKRISLGVVPSYKRVDTCAAE 626 + L + E L ++K GF+D ++A T E +VR R LGV +KR+DTCAAE Sbjct: 482 VRRDGL-PLEAEGLRKLKMMGFTDARLAKLTGRDEGQVRRARTRLGVTAQFKRIDTCAAE 540 Query: 627 FEAHTPYMYSSY------DVECESAPNNKKKVLILGGGPNRIGQGIEFDYCCCHTSFALQ 680 FEA TPYMYS+Y + ECES P + KV+ILGGGPNRIGQGIEFDYCCCH FAL Sbjct: 541 FEAQTPYMYSTYETPVMGEAECESRPTDATKVVILGGGPNRIGQGIEFDYCCCHACFALT 600 Query: 681 DAGYETIMLNSNPETVSTDYDTSDRLYFEPLTIEDVLNVIDLEKPD----GIIVQFGGQT 736 +AGYETIM+N NPETVSTDYDTSDRLYFEPLT E V+ ++ E+ + G+IVQFGGQT Sbjct: 601 EAGYETIMVNCNPETVSTDYDTSDRLYFEPLTFEHVMEILRAEQENGTLHGVIVQFGGQT 660 Query: 737 PLKLALPIKHYLDKHMPMSLSGAGPVRIWGTSPDSIDAAEDRERFNAILDELKIEQPKGG 796 PLKLA ++ A + I GT+PD+ID AEDRERF A++++L ++QP Sbjct: 661 PLKLANALE-------------AEGIPILGTTPDAIDLAEDRERFQALVNDLGLKQPHNA 707 Query: 797 IAKSEADALAIAKEVGYPVVVRPSYVLGGRAMEIVYDDSRLITYLENAVQVDPERPVLVD 856 IA ++A+A A A ++G+P+V+RPSYVLGGRAMEIV D +L Y+ AV V + PVL+D Sbjct: 708 IASTDAEAFAAAGDIGFPLVIRPSYVLGGRAMEIVRDMGQLERYIAEAVVVSGDSPVLLD 767 Query: 857 KYLSDAIEIDVDTLTDSYGNVVIGGIMEHIEQAGVHSGDSACMLPTQTIPASCLQTIRTW 916 YL+ A+E+DVD L D NV + GIM+HIE+AGVHSGDSAC LP ++ L IR Sbjct: 768 SYLAGAVELDVDALCDG-ENVHVAGIMQHIEEAGVHSGDSACSLPPYSLSDDVLARIRVQ 826 Query: 917 TTKLAKKLNVCGLMNCQYAITTSGDVFLLEANPRASRTVPFVSKAIGHPLAKYAALVMSG 976 T LA+ L V GLMN Q+AI +++L+E NPRASRTVPFV+KA +A AA +M+G Sbjct: 827 TEALARALRVKGLMNVQFAI-KDDEIYLIEVNPRASRTVPFVAKATDSAIASIAARLMAG 885 Query: 977 KSLKDLNF---------EKEVIP------------KHVSVKEAVFPFEKFQGCDVILGPE 1015 + L + E + +P SVKEAV PF +F G D ILGPE Sbjct: 886 EPLSNFPLRDPLPHDAPEDQHLPIGDPMTLAHPDTPWFSVKEAVLPFARFPGVDTILGPE 945 Query: 1016 MRSTGEVMSISSEFSSAFAMAQIAAGQKLPLSGTVFLSLNDMTKPH-LEKIAVSFLELGF 1074 MRSTGEVM F AF AQ+ AG LP GTVFLS+ + K L + A ELG Sbjct: 946 MRSTGEVMGWDRSFPRAFLKAQMGAGTVLPTEGTVFLSIKEADKTEMLVETAAMLTELGL 1005 Query: 1075 KIVATSGTAHFLELKGIPVERVLKLHEGRPHAADMVANGQIHLMLITSSGDALDQKDGRQ 1134 IVAT GTA FL+ GI + V K++EGRP DM+ +G+I L++ T+ G A D R+ Sbjct: 1006 DIVATRGTAAFLKDHGIASKVVNKVYEGRPDVVDMLKDGRIALVMNTTEG-AQAVNDSRE 1064 Query: 1135 LRQMALAYKVPVITTVAGALATAEGIKSLKSSAIKMTALQ 1174 +R +AL ++P TT+A + A A+ + + + I + ALQ Sbjct: 1065 IRSVALYDRIPYFTTLAASHAAAQAMIARREGEIGVRALQ 1104 Score = 230 bits (587), Expect = 4e-64 Identities = 151/417 (36%), Positives = 220/417 (52%), Gaps = 28/417 (6%) Query: 90 EIVGKRTDLKKIMILGAGPIVIGQACEFDYSGTQACKALREEGYEVILINSNPATIMTDP 149 E + TD K++ILG GP IGQ EFDY AC AL E GYE I++N NP T+ TD Sbjct: 561 ECESRPTDATKVVILGGGPNRIGQGIEFDYCCCHACFALTEAGYETIMVNCNPETVSTDY 620 Query: 150 ETANRTYIAPMTPELVEQVIEKERPD----ALLPTMGGQTALNLAVALAESGALEKYGVE 205 +T++R Y P+T E V +++ E+ + ++ GGQT L LA ALE G+ Sbjct: 621 DTSDRLYFEPLTFEHVMEILRAEQENGTLHGVIVQFGGQTPLKLA------NALEAEGIP 674 Query: 206 LIGAKLGAIKKAEDRELFKDAMKNIGLKTPPSGIGTTLDECFDIAEKIGEFPLIIRPAFT 265 ++G AI AEDRE F+ + ++GLK P + I +T E F A IG FPL+IRP++ Sbjct: 675 ILGTTPDAIDLAEDRERFQALVNDLGLKQPHNAIASTDAEAFAAAGDIG-FPLVIRPSYV 733 Query: 266 LGGTGGGIAYNKEEFESICKSGLAASATSQVLVEKSLLGWKEYELEVMRDLADNVVIICS 325 LGG I + + E + S S VL++ L G E +++ + D +NV + Sbjct: 734 LGGRAMEIVRDMGQLERYIAEAVVVSGDSPVLLDSYLAGAVELDVDALCD-GENVHVAGI 792 Query: 326 IENIDPMGVHTGDSITVAPAQTLTDREYQRLRDYSIAIIREIGVECGGSNVQFAVNPVDG 385 +++I+ GVH+GDS P +L+D R+R + A+ R + V+ G NVQFA+ D Sbjct: 793 MQHIEEAGVHSGDSACSLPPYSLSDDVLARIRVQTEALARALRVK-GLMNVQFAIK--DD 849 Query: 386 EVMIIEMNPRVSRSSALASKATGFPIAKMAAKLSVGYTL------DQIPNDITRKTPASF 439 E+ +IE+NPR SR+ +KAT IA +AA+L G L D +P+D Sbjct: 850 EIYLIEVNPRASRTVPFVAKATDSAIASIAARLMAGEPLSNFPLRDPLPHDAPEDQHLPI 909 Query: 440 -------EPSIDYVVTKIPRFAFEKFPGSQPLLTTQMKSVGESMALGRTFQESFQKA 489 P + K F +FPG +L +M+S GE M R+F +F KA Sbjct: 910 GDPMTLAHPDTPWFSVKEAVLPFARFPGVDTILGPEMRSTGEVMGWDRSFPRAFLKA 966 Lambda K H 0.317 0.133 0.383 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 3005 Number of extensions: 135 Number of successful extensions: 22 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 2 Number of HSP's successfully gapped: 2 Length of query: 1187 Length of database: 1105 Length adjustment: 46 Effective length of query: 1141 Effective length of database: 1059 Effective search space: 1208319 Effective search space used: 1208319 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 58 (26.9 bits)
Align candidate 3609253 Dshi_2639 (carbamoyl-phosphate synthase, large subunit (RefSeq))
to HMM TIGR01369 (carB: carbamoyl-phosphate synthase, large subunit (EC 6.3.5.5))
../bin/blast/fastacmd -i /tmp/list.11440.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.11440.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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