Align phosphoglycerate dehydrogenase; EC 1.1.1.95 (characterized)
to candidate 3609936 Dshi_3318 D-3-phosphoglycerate dehydrogenase (RefSeq)
Query= CharProtDB::CH_004924 (525 letters) >FitnessBrowser__Dino:3609936 Length = 531 Score = 413 bits (1062), Expect = e-120 Identities = 218/513 (42%), Positives = 320/513 (62%), Gaps = 9/513 (1%) Query: 3 RVLVSDKMSNDGLQPL----IESDFIEIVQKNVADAEDELHTFDALLVRSATKVTEDLFN 58 +VLVSDK+S +Q IE DF + K+ + + +D L +RSATKVTE L Sbjct: 4 KVLVSDKLSETAVQIFRDRGIEVDFEPSLGKDKDKLAEVIGKYDGLAIRSATKVTEKLLA 63 Query: 59 KMTSLKIVGRAGVGVDNIDIDEATKHGVIVINAPNGNTISTAEHTFAMISSLMRHIPQAN 118 +LK+VGRAG+G DN+D A+K GVIV+N P GN I+TAEH AM+ ++ R IP+A+ Sbjct: 64 HADNLKVVGRAGIGTDNVDKVAASKKGVIVMNTPFGNMITTAEHAIAMMFAVARQIPEAS 123 Query: 119 ISVKSREWNRTAYVGSELYGKTLGIVGLGRIGSEIAQRRGAFGMTVHVFDPFLTEERAKK 178 S + +W ++ ++G EL KTLG++G G IG + +R M V +DPFL+EERA K Sbjct: 124 ASTHAGKWEKSKFMGVELTAKTLGVIGAGNIGGIVCERALGLKMKVIAYDPFLSEERADK 183 Query: 179 IGVNSRTFEEVLESADIITVHTPLTKETKGLLNKETIAKTKKGVRLINCARGGIIDEAAL 238 +GV + +L AD IT+H PLT +T+ +L++E + KTKKGVR+INCARGG++DE AL Sbjct: 184 LGVEKVDLDTLLARADFITLHVPLTDQTRNILSREALEKTKKGVRIINCARGGLVDEQAL 243 Query: 239 LEALENGHVAGAALDVFEVEPPVDNKLVDHPLVIATPHLGASTKEAQLNVAAQVSEEVLQ 298 + L++GHVAGAA DVF EP +N L P V+ TPHLGAST EAQ NVA QV+E++ Sbjct: 244 ADLLKSGHVAGAAFDVFAEEPATENPLFGLPNVVCTPHLGASTTEAQENVALQVAEQMSN 303 Query: 299 FAKGLPVMSAINLPAMTKDEFAKIKPYHQIAGKIGSLVSQCMKEPVQDVAIQYEGTIAKL 358 + V +A+N+P++T +E + P+ ++AG +G+ V Q EP+ + I Y GT+AK+ Sbjct: 304 YLLSGAVENALNMPSVTAEEAKTMGPWVKLAGHLGTFVGQLTDEPIDSIEILYNGTVAKM 363 Query: 359 ETSFITKALLSGFLKPRVDSTVNEVNAGGVAKERGISFSEKISSSESGYDNCISVKVTGD 418 + A+++G ++ + VN V+A +AKERGI S +D + + V D Sbjct: 364 NLEALNCAVIAGIMQ-ATNPDVNMVSAPVIAKERGIGLSTTTQDKSGVFDGYVKLTVKTD 422 Query: 419 RSTFTVTATYIPHFGERIVEINGFNIDFYPTGHLVYIQHQDTTGVIGRVGRILGDNDINI 478 + T ++ T R ++I G NID H++Y ++DT G+IG +G ILG+N +NI Sbjct: 423 QRTRSIAGTVFSDGKPRFIQIKGINIDAEIGEHMLYTTNKDTPGMIGTLGGILGENQVNI 482 Query: 479 ATMQVGRKEKGGEAIMMLSFD----RHLEDKIV 507 A +GR E G+AI ML D R ++DK++ Sbjct: 483 ANFTLGRNETNGDAIAMLYLDAPLPRDVQDKLI 515 Lambda K H 0.317 0.134 0.374 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 639 Number of extensions: 26 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 2 Number of HSP's successfully gapped: 1 Length of query: 525 Length of database: 531 Length adjustment: 35 Effective length of query: 490 Effective length of database: 496 Effective search space: 243040 Effective search space used: 243040 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 52 (24.6 bits)
Align candidate 3609936 Dshi_3318 (D-3-phosphoglycerate dehydrogenase (RefSeq))
to HMM TIGR01327 (serA: phosphoglycerate dehydrogenase (EC 1.1.1.95))
../bin/blast/fastacmd -i /tmp/list.7339.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.7339.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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