Align dihydroxy-acid dehydratase (EC 4.2.1.9) (characterized)
to candidate 3606698 Dshi_0129 dihydroxy-acid dehydratase (RefSeq)
Query= BRENDA::Q97UB2 (558 letters) >FitnessBrowser__Dino:3606698 Length = 577 Score = 514 bits (1325), Expect = e-150 Identities = 274/560 (48%), Positives = 366/560 (65%), Gaps = 8/560 (1%) Query: 4 KLNSPSRY--HGIYNAPHRAFLRSVGLTDEEIGKPLVAIATAWSEAGPCNFHTLALARVA 61 K PSR+ G APHR++ ++G+T+EEI +PLV +AT W+EA PCN A+ Sbjct: 8 KSKLPSRHVTEGPSRAPHRSYYYAMGMTEEEIHQPLVGVATCWNEAAPCNIALSRQAQAV 67 Query: 62 KEGTKEAGLSPLAFPTMVVNDNIGMGSEGMRYSLVSRDLIADMVEAQFNAHAFDGLVGIG 121 K G K+A +P F T+ V D I MG EGMR SL SR+ IAD VE H +D +VG+ Sbjct: 68 KMGVKQASGTPREFTTITVTDGIAMGHEGMRSSLASREAIADTVELTMRGHCYDAIVGLA 127 Query: 122 GCDKTTPGILMAMARLNVPSIYIYGGSAEPGYFMGKRLTIEDVHEAIGAYLAKRITENEL 181 GCDK+ PG++MAM RLNVPS++IYGGS PG G+ +T++DV EA+G + A T+ EL Sbjct: 128 GCDKSLPGMMMAMVRLNVPSVFIYGGSILPGRLNGEDVTVQDVFEAVGKHQAGNYTDAEL 187 Query: 182 YEIEKRAHPTLGTCSGLFTANTMGSMSEALGMALPGSASPTATSSRRVMYVKETGKALGS 241 +E+ A P+ G C G FTANTM +SEA+G+ALP SA A R Y + +G+A+ Sbjct: 188 EVLERVACPSAGACGGQFTANTMACVSEAIGLALPNSAGAPAPYESRDQYGEASGRAVMD 247 Query: 242 LIENGIKSREILTFEAFENAITTLMAMGGSTNAVLHLLAIAYEAGVKLTLDDFNRISKRT 301 LIE GI++R+I+T ++ ENA + GGSTNA LHL AIA+EAG++ TL D I + T Sbjct: 248 LIEKGIRARDIVTRKSLENAARIVACTGGSTNAGLHLPAIAHEAGIEFTLQDVCDIFRDT 307 Query: 302 PYIASMKPGGDYVMADLDEVGGVPVVLKKLLDAGLLHGDVLTVTGKTMKQNLEQYKYPNV 361 PY +KPGG YV D+ E GGVPVV+++L AGL+H D +TVTG ++ + L+ K Sbjct: 308 PYFVDLKPGGKYVAKDMYEAGGVPVVMRELRRAGLIHEDCMTVTGYSIGEELD--KVTLE 365 Query: 362 PHSHIVRDVKNPIKPRGGIVILKGSLAPEGAVIKVA--ATNVVKFEGKAKVYNSEDDAFK 419 ++ V P+ GG+V L+G+LAPEGA++K+A + + + F G A+V+ E+DAF+ Sbjct: 366 ADGRVIYPVDTPLSTTGGVVGLEGNLAPEGAIVKIAGMSDDQLVFTGPARVFECEEDAFE 425 Query: 420 GVQSGEVSEGEVVIIRYEGPKGAPGMPEMLRVTAAIMGAGL-NNVALVTDGRFSGATRGP 478 VQ+ +EG+V +IR EGP G PGM EML TAA+ G G+ VAL+TDGRFSGATRG Sbjct: 426 AVQNRAYAEGDVFVIRNEGPAGGPGMREMLATTAALSGQGMGKKVALITDGRFSGATRGF 485 Query: 479 MVGHVAPEAMVGGPIAIVEDGDTIVIDVESERLDLKLSEEEIKNRLKRWSPPSPR-YKSG 537 VGHV PEA GGPIA+++DGD I ID L + LSE+E+ R WS P Y SG Sbjct: 486 CVGHVGPEAAHGGPIAMLKDGDMITIDALKGELSVALSEDELAARKDAWSGPRETIYASG 545 Query: 538 LLAKYASLVSQASMGAVTRP 557 L KYA LV A +GAVT P Sbjct: 546 ALWKYAQLVGGARLGAVTHP 565 Lambda K H 0.316 0.134 0.383 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 883 Number of extensions: 24 Number of successful extensions: 5 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 558 Length of database: 577 Length adjustment: 36 Effective length of query: 522 Effective length of database: 541 Effective search space: 282402 Effective search space used: 282402 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 53 (25.0 bits)
Align candidate 3606698 Dshi_0129 (dihydroxy-acid dehydratase (RefSeq))
to HMM TIGR00110 (ilvD: dihydroxy-acid dehydratase (EC 4.2.1.9))
../bin/blast/fastacmd -i /tmp/list.29501.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.29501.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.