Align acetohydroxyacid synthase subunit B (EC 2.2.1.6) (characterized)
to candidate 3608378 Dshi_1779 acetolactate synthase, large subunit, biosynthetic type (RefSeq)
Query= metacyc::MONOMER-18810 (585 letters) >FitnessBrowser__Dino:3608378 Length = 585 Score = 609 bits (1571), Expect = e-179 Identities = 310/571 (54%), Positives = 400/571 (70%), Gaps = 6/571 (1%) Query: 18 EMIGAEILVHALAEEGVEYVWGYPGGAVLYIYDELHKQTKFEHILVRHEQAAVHAADGYA 77 +M GA+++V AL ++GV+ V+GYPGGAVL IYDE+ +Q + +HILVRHEQAA HAA+GYA Sbjct: 4 QMTGAQMVVQALKDQGVDTVFGYPGGAVLPIYDEIFQQNEIKHILVRHEQAATHAAEGYA 63 Query: 78 RATGKVGVALVTSGPGVTNAVTGIATAYLDSIPMVVITGNVPTHAIGQDAFQECDTVGIT 137 R+TGK GV LVTSGPG TNAVTGI A +DSIPMVV++G VPT IG DAFQE DTVGIT Sbjct: 64 RSTGKPGVVLVTSGPGATNAVTGITDALMDSIPMVVLSGQVPTFMIGNDAFQEADTVGIT 123 Query: 138 RPIVKHNFLVKDVRDLAATIKKAFFIAATGRPGPVVVDIPKDVSRNACKYEYPKSIDMRS 197 RP KHN+LVK+ LA TI +AF +A +GRPGPV+VDIPKDV + Y P D R Sbjct: 124 RPCTKHNWLVKETDLLADTIHQAFHVATSGRPGPVLVDIPKDVQFASGTYVPPAKADTRH 183 Query: 198 YNPVNKGHSGQIRKAVALLQGAERPYIYTGGGVVLAN--ASDELRQLAALTGHPVTNTLM 255 Y P KG I V L++ AERP YTGGGV+ + AS LR+ A TG P+T+TLM Sbjct: 184 YQPRVKGDVAAITAMVELMETAERPIFYTGGGVINSGPAASQLLREFVAETGFPITSTLM 243 Query: 256 GLGAFPGTSKQFVGMLGMHGTYEANMAMQNCDVLIAIGARFDDRVIGNPAHFTSQARKII 315 GLGA+P + + ++GMLGMHG YEAN+AM CDV+I IGARFDDR+ G A F+ +++K I Sbjct: 244 GLGAYPASGENWIGMLGMHGLYEANLAMHGCDVMINIGARFDDRITGRVADFSPESKK-I 302 Query: 316 HIDIDPSSISKRVKVDIPIVGNVKDVLQELIAQIKASDIKPKREALAKWWEQIEQWRSVD 375 HIDIDPSSI+K ++ D+PI+G++ VL++ + KA K + A+ WW QIE+WR+V Sbjct: 303 HIDIDPSSINKVIRTDVPIIGDIAHVLEDALRIWKARGRKTNKAAVKAWWTQIEEWRTVR 362 Query: 376 CLKYDRSSEIIKPQYVVEKIWELTKG--DAFICSDVGQHQMWAAQFYKFDEPRRWINSGG 433 CL + S IKPQY ++++ LTK FI ++VGQHQMWAAQ+ FDEP RW+ SGG Sbjct: 363 CLDFKNSETTIKPQYAMQRLEALTKDHPKRFIATEVGQHQMWAAQYLGFDEPNRWMTSGG 422 Query: 434 LGTMGVGLPYAMGIKKAFPEKEVVTITGEGSIQMCIQELSTCLQYDTPVKICSLNNGYLG 493 LGTMG G P ++G++ A P+ V+ + GE S M +QE+ T +QY PVK LNN LG Sbjct: 423 LGTMGYGFPASIGVQVAHPDALVINVAGEASWLMNMQEMGTAIQYMLPVKQFILNNERLG 482 Query: 494 MVRQWQEIEYDNRYSHSYMDALPDFVKLAEAYGHVGMRVEKTSDVEPALREAFRLKDRTV 553 MVRQWQE+ + RYSHS+ DALPDFVKLAEA+G G+ + D++ A+ E D V Sbjct: 483 MVRQWQELLHGERYSHSWSDALPDFVKLAEAFGAKGILCKDPKDLDDAIMEMLEY-DGPV 541 Query: 554 FLDFQTDPTENVWPMVQAGKGISEMLLGAED 584 D + EN +PM+ +G +EMLLG D Sbjct: 542 IFDCLVEKHENCFPMIPSGAPHNEMLLGEAD 572 Lambda K H 0.319 0.135 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 952 Number of extensions: 31 Number of successful extensions: 5 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 585 Length of database: 585 Length adjustment: 37 Effective length of query: 548 Effective length of database: 548 Effective search space: 300304 Effective search space used: 300304 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 53 (25.0 bits)
Align candidate 3608378 Dshi_1779 (acetolactate synthase, large subunit, biosynthetic type (RefSeq))
to HMM TIGR00118 (ilvB: acetolactate synthase, large subunit, biosynthetic type (EC 2.2.1.6))
../bin/blast/fastacmd -i /tmp/list.22659.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.22659.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.