Align 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) (characterized)
to candidate 3606718 Dshi_0149 dihydrodipicolinate synthase (RefSeq)
Query= BRENDA::Q8UGL3 (294 letters) >FitnessBrowser__Dino:3606718 Length = 291 Score = 374 bits (960), Expect = e-108 Identities = 195/293 (66%), Positives = 228/293 (77%), Gaps = 3/293 (1%) Query: 1 MFKGSIPALITPFTDNGSVDEKAFAAHVEWQIAEGSNGLVPVGTTGESPTLSHDEHKRVV 60 MFKGS+PAL+TP D G+VD A VEWQIAEGS+GLVPVGTTGESPTLSH+EH+ VV Sbjct: 1 MFKGSMPALVTPMKD-GAVDFATLEALVEWQIAEGSHGLVPVGTTGESPTLSHEEHEAVV 59 Query: 61 ELCIEVAAKRVPVIAGAGSNNTDEAIELALHAQEAGADALLVVTPYYNKPTQKGLFAHFS 120 IEVAA RVPVIAGAGSNNT EA+ HA++AGAD LVVTPYYNKPTQ G+ AH++ Sbjct: 60 AKVIEVAAGRVPVIAGAGSNNTVEAVRFVRHAKDAGADGALVVTPYYNKPTQGGMIAHYT 119 Query: 121 AVAEAVKLPIVIYNIPPRSVVDMSPETMGALVKAHKNIIGVKDATGKLDRVSEQRISCGK 180 A+AEA +PIVIYNIP RSVVDM+P TM AL A I+GVKDATG L RVS+ R++CG Sbjct: 120 ALAEAADIPIVIYNIPGRSVVDMTPATMAALA-ALPTIVGVKDATGDLARVSQTRMACGP 178 Query: 181 DFVQLSGEDGTALGFNAHGGVGCISVTANVAPRLCSEFQAAMLAGDYAKALEYQDRLMPL 240 +F+QLSGED TALGFNAHGGVGCISVTANVAP LC++FQ A LAGD+A AL QD+LMPL Sbjct: 179 EFIQLSGEDATALGFNAHGGVGCISVTANVAPALCAQFQEATLAGDFATALALQDKLMPL 238 Query: 241 HRAIFMEPGVCGTKYALSKTRGGNRRVRSPLMSTLEPATEAAIDAALKHAGLM 293 H AIF+EPG+ G KYALS + VR PL+ L T+ I A+ HAG++ Sbjct: 239 HEAIFVEPGLVGAKYALSLLGKCSEDVRLPLLG-LSDGTKVLIKDAMIHAGIL 290 Lambda K H 0.317 0.133 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 346 Number of extensions: 12 Number of successful extensions: 3 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 294 Length of database: 291 Length adjustment: 26 Effective length of query: 268 Effective length of database: 265 Effective search space: 71020 Effective search space used: 71020 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 48 (23.1 bits)
Align candidate 3606718 Dshi_0149 (dihydrodipicolinate synthase (RefSeq))
to HMM TIGR00674 (dapA: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7))
../bin/blast/fastacmd -i /tmp/list.20922.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.20922.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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