Align Succinyl-diaminopimelate desuccinylase; SDAP desuccinylase; EC 3.5.1.18; N-succinyl-LL-2,6-diaminoheptanedioate amidohydrolase (uncharacterized)
to candidate 3606580 Dshi_0012 succinyl-diaminopimelate desuccinylase (RefSeq)
Query= curated2:Q5LN80 (380 letters) >FitnessBrowser__Dino:3606580 Length = 379 Score = 557 bits (1436), Expect = e-163 Identities = 278/377 (73%), Positives = 306/377 (81%) Query: 4 DAARLTADLIRCASVTPADDGALDVLERVLSQAGFSCTRVDRGGICNLFARWGDKGHARS 63 D LTADLIRC SVTP + GAL +LE LS AGF+CTRVDR GI NLFARWG+KGHARS Sbjct: 3 DPVALTADLIRCPSVTPEEGGALSLLEARLSAAGFACTRVDRNGIANLFARWGEKGHARS 62 Query: 64 FGFNGHTDVVPVGDAAAWTVAPFGAEEKDGFLYGRGATDMKSGVAAFVAAAVDLVTTTPP 123 FGFNGHTDVVPVG A W PFGA+ + ++YGRGA DMKS VAAF AAA+D V TPP Sbjct: 63 FGFNGHTDVVPVGARADWRFDPFGAQVEGDWMYGRGAVDMKSAVAAFAAAAMDFVADTPP 122 Query: 124 EGAVIVTITGDEEGDALDGTKALLDYMAASGERMSVCLVGEPTCPDRMGEMIKIGRRGSM 183 +GAVI+ ITGDEEGDA DGT ALLD+MAA GE M VCLVGEPTCPD MGEM+KIGRRGSM Sbjct: 123 DGAVILAITGDEEGDAKDGTVALLDWMAAQGEAMDVCLVGEPTCPDEMGEMMKIGRRGSM 182 Query: 184 TAWFTVTGVQGHSAYPHRAKNPLPAMARLMDRLASHGLDQGTDHFDPSTLAVVTIDTGNT 243 T +F GVQGHSAYPHRAKNPLPA+A+L+DRLA LD GTDHFDPSTLAV T DTGN Sbjct: 183 TFFFEALGVQGHSAYPHRAKNPLPALAKLVDRLAGLELDTGTDHFDPSTLAVTTFDTGNP 242 Query: 244 ATNVIPAQCRGAVNIRFNDLHSGASLTGWMQGEADRVAEEFGVAVEMKVKISGESFLTPP 303 A NVIPA CR VNIRFND HS SLT ++G A VA E G+ + +V +SGESF+TPP Sbjct: 243 ANNVIPAACRATVNIRFNDAHSSESLTAMVRGIAAEVAAETGIEITDRVSVSGESFITPP 302 Query: 304 GELSDLVAAAVEAETGVTPVLSTSGGTSDARFVKDHCPVVEFGLVGRTMHQVDERVEIAQ 363 G LSDLVAAAVE ETG PVLSTSGGTSDARFV+ HCPVVEFGLVG++MHQVDERV IAQ Sbjct: 303 GRLSDLVAAAVETETGRVPVLSTSGGTSDARFVQHHCPVVEFGLVGKSMHQVDERVAIAQ 362 Query: 364 IHQLKAIYGRILRDFFA 380 I QLKAIY RILRD+FA Sbjct: 363 IPQLKAIYTRILRDYFA 379 Lambda K H 0.319 0.135 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 562 Number of extensions: 17 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 380 Length of database: 379 Length adjustment: 30 Effective length of query: 350 Effective length of database: 349 Effective search space: 122150 Effective search space used: 122150 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 50 (23.9 bits)
Align candidate 3606580 Dshi_0012 (succinyl-diaminopimelate desuccinylase (RefSeq))
to HMM TIGR01246 (dapE: succinyl-diaminopimelate desuccinylase (EC 3.5.1.18))
../bin/blast/fastacmd -i /tmp/list.1193.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.1193.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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