Align anthranilate synthase (EC 4.1.3.27) (characterized)
to candidate 3608396 Dshi_1796 anthranilate synthase component I (RefSeq)
Query= BRENDA::P20580 (492 letters) >FitnessBrowser__Dino:3608396 Length = 509 Score = 415 bits (1067), Expect = e-120 Identities = 246/480 (51%), Positives = 307/480 (63%), Gaps = 26/480 (5%) Query: 25 ADFDTPLSIYLKLADA-PNSYLLESVQGGEKWGRYSIIGLPCRTVLRVYDHQVRISIDGV 83 AD DTP+S+ LKLA A +S++LESV GGE GRYS++GL + RI+ Sbjct: 28 ADLDTPVSLMLKLAGARKDSFMLESVTGGEVRGRYSVVGLKPDLIWECRGTGARIN---- 83 Query: 84 ETERFDC-------ADPLAFVEEFKARYQVPTVPGLPRFDGGLVGYFGYDCVRYVEKRLA 136 + RFD DPLA + A ++ LP GL GY GYD +R VE Sbjct: 84 RSARFDAEAFEDIPGDPLAALRALIAESRIEMPDELPAIAAGLFGYLGYDMIRLVEHLPN 143 Query: 137 TCPNPDPLGNPDILLMVSDAVVVFDNLAGKIHAI--VLAD------PSEENAYERGQARL 188 NPDPLG PD +L+ V V D + G++ + V A+ S AY + R+ Sbjct: 144 V--NPDPLGLPDAVLVRPSVVAVLDGVKGEVTVVSPVWANGSAGGGQSARAAYAQAAERV 201 Query: 189 EELLERL-RQPITPRRGLDLEAAQGREPAFRASFTREDYENAVGRIKDYILAGDCMQVVP 247 + + L R + RR L EAA+ EP ++F DY AV R KDYI AGD QVVP Sbjct: 202 MDAVRDLERSAMAERRDLG-EAAELGEPV--SNFAHADYLAAVERAKDYIRAGDIFQVVP 258 Query: 248 SQRMSIEFKAAPIDLYRALRCFNPTPYMYFFNFGDFHVVGSSPEVLVRVEDGLVTVRPIA 307 SQR S F P LYR+LR NP+P+M++FNFG F +VG+SPE+LVRV VT+RPIA Sbjct: 259 SQRWSQAFPLPPFALYRSLRRTNPSPFMFYFNFGGFQIVGASPEILVRVFGREVTIRPIA 318 Query: 308 GTRPRGINEEADLALEQDLLSDAKEIAEHLMLIDLGRNDVGRVSDIGAVKVTEKMVIERY 367 GTRPRG D ALE DLL+DAKE AEHLML+DLGRNDVGRV+ IG V+ TE+ +IERY Sbjct: 319 GTRPRGATPAEDDALEADLLADAKECAEHLMLLDLGRNDVGRVAKIGTVRPTEQFIIERY 378 Query: 368 SNVMHIVSNVTGQLREGLSAMDALRAILPAGTLSGAPKIRAMEIIDELEPVKRGVYGGAV 427 S+VMHIVSNV G+L E A+ AL A LPAGT+SGAPK+RAMEIIDELEP KRGVYGG Sbjct: 379 SHVMHIVSNVVGELSEEHDALSALLAGLPAGTVSGAPKVRAMEIIDELEPEKRGVYGGGC 438 Query: 428 GYLAWNGNMDTAIAIRTAVIKNGELHVQAGGGIVADSVPALEWEETINKRRAMFRAVALA 487 GY A NG+MD IA+RTAV+K+ L++QAGGG+V DS P E++ET+NK +A+ A A Sbjct: 439 GYFAANGDMDMCIALRTAVVKDETLYIQAGGGVVYDSDPEAEFQETVNKAKAIRMAAQQA 498 Lambda K H 0.321 0.139 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 687 Number of extensions: 36 Number of successful extensions: 5 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 492 Length of database: 509 Length adjustment: 34 Effective length of query: 458 Effective length of database: 475 Effective search space: 217550 Effective search space used: 217550 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 52 (24.6 bits)
Align candidate 3608396 Dshi_1796 (anthranilate synthase component I (RefSeq))
to HMM TIGR00564 (trpE: anthranilate synthase component I (EC 4.1.3.27))
../bin/blast/fastacmd -i /tmp/list.10511.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.10511.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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