Align Putative branched-chain-amino-acid aminotransferase; BCAT; EC 2.6.1.42; Transaminase B (uncharacterized)
to candidate 3609919 Dshi_3301 branched-chain amino acid aminotransferase (RefSeq)
Query= curated2:O27481 (306 letters) >FitnessBrowser__Dino:3609919 Length = 289 Score = 214 bits (545), Expect = 2e-60 Identities = 116/294 (39%), Positives = 175/294 (59%), Gaps = 14/294 (4%) Query: 4 EASGKIWLNGEMVEWEEATVHVLSHVVHYGSSVFEGIRCYRNSKGSAIFRLREHVKRLFD 63 + G IW++G++V+W A VH+L+H +HY SSVFEG R Y IF R H +RL Sbjct: 7 DRDGTIWMDGKLVDWRAANVHILTHAMHYASSVFEGERAYNGK----IFESRRHSERLHF 62 Query: 64 SAKIYRMDIPYTQEQICDAIVETVRENGLEECYIRPVVFRGYG-EMGVHPVNCPVDVAVA 122 SA ++IP+T ++I A E ++ NGL + Y+R V +RG G +MGV PV +A+A Sbjct: 63 SAGELDIEIPFTVDEIEAAKYEVMKVNGLSDAYVRAVAWRGAGPDMGVASARNPVHLAIA 122 Query: 123 AWEWGAYLGAEALEVGVDAGVSTWRRMAPNTMPNMAKAGGNYLNSQLAKMEAVRHGYDEA 182 WEWG+Y G +A G ++ W+R +P T+P AKA G Y+ +K A G +A Sbjct: 123 CWEWGSYYG-DAKTRGAKLDIAKWKRPSPETIPVHAKAAGLYMICTTSKHAAEAKGCSDA 181 Query: 183 IMLDYHGYISEGSGENIFLVSEGEIYTPPVSSSLLRGITRDSVIKIARTEGVTVHEEPIT 242 + +DY GY++E +G NIF V +GE++TP L GITR +VI + R + V VHE I Sbjct: 182 LFMDYRGYVAEATGANIFFVKDGEVHTPD-PDCFLNGITRQTVIGMLRDKQVKVHERHIM 240 Query: 243 REMLYIADEAFFTGTAAEITPIRSVD--GIEIGAGRRGPVTKLLQDEFFRIIRA 294 E L ++ + TGTAAE+TP+ + E+GA +T+ + + + +++RA Sbjct: 241 PEELEGFEQCWLTGTAAEVTPVGQIGTYNFEVGA-----LTRDIAESYEQLVRA 289 Lambda K H 0.320 0.136 0.414 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 286 Number of extensions: 16 Number of successful extensions: 5 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 306 Length of database: 289 Length adjustment: 26 Effective length of query: 280 Effective length of database: 263 Effective search space: 73640 Effective search space used: 73640 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 48 (23.1 bits)
Align candidate 3609919 Dshi_3301 (branched-chain amino acid aminotransferase (RefSeq))
to HMM TIGR01122 (ilvE: branched-chain amino acid aminotransferase (EC 2.6.1.42))
../bin/blast/fastacmd -i /tmp/list.17994.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.17994.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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