GapMind for Amino acid biosynthesis

 

Alignments for a candidate for hisE in Dyella japonica UNC79MFTsu3.2

Align putative bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase (EC 3.5.4.19; EC 3.6.1.31) (characterized)
to candidate N515DRAFT_2931 N515DRAFT_2931 phosphoribosyl-ATP pyrophosphatase /phosphoribosyl-AMP cyclohydrolase

Query= ecocyc::HISTCYCLOPRATPPHOS
         (203 letters)



>FitnessBrowser__Dyella79:N515DRAFT_2931
          Length = 209

 Score =  219 bits (558), Expect = 3e-62
 Identities = 115/197 (58%), Positives = 140/197 (71%), Gaps = 3/197 (1%)

Query: 10  LDWEKTDGLMPVIVQHAVSGEVLMLGYMNPEALDKTLESGKVTFFSRTKQRLWTKGETSG 69
           LDW K DGL+P IVQH ++GEVLMLGYMN EAL  +L S +VTFFSR+KQRLWTKGE+SG
Sbjct: 11  LDWSKGDGLLPAIVQHWLTGEVLMLGYMNAEALAHSLSSAQVTFFSRSKQRLWTKGESSG 70

Query: 70  NFLNVVSIAPDCDNDTLLVLANPIGPTCHKGTSSCFG---DTAHQWLFLYQLEQLLAERK 126
           + L + S   DCD DTLL+ A P GPTCH GTSSCFG   D A    FL  L++L+ +R 
Sbjct: 71  HVLALKSARIDCDGDTLLLQAEPQGPTCHLGTSSCFGERADVAPPLGFLATLDRLVEQRA 130

Query: 127 SADPETSYTAKLYASGTKRIAQKVGEEGVETALAATVHDRFELTNEASDLMYHLLVLLQD 186
           +  P  SYT +L+  G +RIAQKVGEEGVETALAA V D   L  EA+DL++HL+V L+ 
Sbjct: 131 AERPAGSYTTRLFEDGIRRIAQKVGEEGVETALAAVVQDDEALLGEAADLVFHLMVALRA 190

Query: 187 QGLDLTTVIENLRKRHQ 203
           +GL  + V   L  RHQ
Sbjct: 191 RGLSTSDVCRVLEARHQ 207


Lambda     K      H
   0.317    0.132    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 144
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 203
Length of database: 209
Length adjustment: 21
Effective length of query: 182
Effective length of database: 188
Effective search space:    34216
Effective search space used:    34216
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)

Align candidate N515DRAFT_2931 N515DRAFT_2931 (phosphoribosyl-ATP pyrophosphatase /phosphoribosyl-AMP cyclohydrolase)
to HMM PF01502 (PRA-CH)

Software error:

../bin/blast/fastacmd -i /tmp/list.11936.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.11936.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.