GapMind for Amino acid biosynthesis

 

Alignments for a candidate for hisF in Dyella japonica UNC79MFTsu3.2

Align IGP synthase cyclase subunit; EC 4.1.3.- (characterized)
to candidate N515DRAFT_2932 N515DRAFT_2932 cyclase

Query= CharProtDB::CH_024847
         (258 letters)



>FitnessBrowser__Dyella79:N515DRAFT_2932
          Length = 256

 Score =  330 bits (847), Expect = 1e-95
 Identities = 165/257 (64%), Positives = 197/257 (76%), Gaps = 1/257 (0%)

Query: 1   MLAKRIIPCLDVRDGQVVKGVQFRNHEIIGDIVPLAKRYAEEGADELVFYDITASSDGRV 60
           ML++RIIPCLDVRDG+VVKGV+FR+H ++G+IV LA RY +EGADELVFYDITAS +GR 
Sbjct: 1   MLSRRIIPCLDVRDGKVVKGVRFRDHVVMGEIVELALRYRDEGADELVFYDITASPEGRS 60

Query: 61  VDKSWVSRVAEVIDIPFCVAGGIKSLEDAAKILSFGADKISINSPALADPTLITRLADRF 120
           VD+ WV RVA  IDIPFCVAGGI+S+EDA ++L  GADKIS+NSPAL  P LI  LA  F
Sbjct: 61  VDRGWVERVARAIDIPFCVAGGIRSVEDAREVLHAGADKISVNSPALERPALIGELAAAF 120

Query: 121 GVQCIVVGIDTWYDAETGKYHVNQYTGDESRTRVTQWETLDWVQEVQKRGAGEIVLNMMN 180
           GVQC+VVG+D+  DA+ G++ V QYTGD ++T+     TLDW+ E Q+ GAGEIVLN M 
Sbjct: 121 GVQCVVVGVDSLRDAD-GEWRVRQYTGDPTKTQALARRTLDWIDEAQRLGAGEIVLNCMG 179

Query: 181 QDGVRNGYDLEQLKKVREVCHVPLIASGGAGTMEHFLEAFRDADVDGALAASVFHKQIIN 240
            DGVR GYDLEQL   R +C VPL+ASGGAG  EHF +AF  ADVDGALAASVFH   I 
Sbjct: 180 SDGVREGYDLEQLHAARALCRVPLVASGGAGAPEHFRDAFAVADVDGALAASVFHSGAIA 239

Query: 241 IGELKAYLATQGVEIRI 257
           I  LK YL   G+  R+
Sbjct: 240 IPSLKQYLRRAGIATRL 256


Lambda     K      H
   0.321    0.138    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 295
Number of extensions: 8
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 258
Length of database: 256
Length adjustment: 24
Effective length of query: 234
Effective length of database: 232
Effective search space:    54288
Effective search space used:    54288
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)

Align candidate N515DRAFT_2932 N515DRAFT_2932 (cyclase)
to HMM TIGR00735 (hisF: imidazoleglycerol phosphate synthase, cyclase subunit)

Software error:

../bin/blast/fastacmd -i /tmp/list.20880.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.20880.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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