Align IGP synthase cyclase subunit; EC 4.1.3.- (characterized)
to candidate N515DRAFT_2932 N515DRAFT_2932 cyclase
Query= CharProtDB::CH_024847 (258 letters) >FitnessBrowser__Dyella79:N515DRAFT_2932 Length = 256 Score = 330 bits (847), Expect = 1e-95 Identities = 165/257 (64%), Positives = 197/257 (76%), Gaps = 1/257 (0%) Query: 1 MLAKRIIPCLDVRDGQVVKGVQFRNHEIIGDIVPLAKRYAEEGADELVFYDITASSDGRV 60 ML++RIIPCLDVRDG+VVKGV+FR+H ++G+IV LA RY +EGADELVFYDITAS +GR Sbjct: 1 MLSRRIIPCLDVRDGKVVKGVRFRDHVVMGEIVELALRYRDEGADELVFYDITASPEGRS 60 Query: 61 VDKSWVSRVAEVIDIPFCVAGGIKSLEDAAKILSFGADKISINSPALADPTLITRLADRF 120 VD+ WV RVA IDIPFCVAGGI+S+EDA ++L GADKIS+NSPAL P LI LA F Sbjct: 61 VDRGWVERVARAIDIPFCVAGGIRSVEDAREVLHAGADKISVNSPALERPALIGELAAAF 120 Query: 121 GVQCIVVGIDTWYDAETGKYHVNQYTGDESRTRVTQWETLDWVQEVQKRGAGEIVLNMMN 180 GVQC+VVG+D+ DA+ G++ V QYTGD ++T+ TLDW+ E Q+ GAGEIVLN M Sbjct: 121 GVQCVVVGVDSLRDAD-GEWRVRQYTGDPTKTQALARRTLDWIDEAQRLGAGEIVLNCMG 179 Query: 181 QDGVRNGYDLEQLKKVREVCHVPLIASGGAGTMEHFLEAFRDADVDGALAASVFHKQIIN 240 DGVR GYDLEQL R +C VPL+ASGGAG EHF +AF ADVDGALAASVFH I Sbjct: 180 SDGVREGYDLEQLHAARALCRVPLVASGGAGAPEHFRDAFAVADVDGALAASVFHSGAIA 239 Query: 241 IGELKAYLATQGVEIRI 257 I LK YL G+ R+ Sbjct: 240 IPSLKQYLRRAGIATRL 256 Lambda K H 0.321 0.138 0.409 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 295 Number of extensions: 8 Number of successful extensions: 3 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 258 Length of database: 256 Length adjustment: 24 Effective length of query: 234 Effective length of database: 232 Effective search space: 54288 Effective search space used: 54288 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 47 (22.7 bits)
Align candidate N515DRAFT_2932 N515DRAFT_2932 (cyclase)
to HMM TIGR00735 (hisF: imidazoleglycerol phosphate synthase, cyclase subunit)
../bin/blast/fastacmd -i /tmp/list.20880.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.20880.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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