GapMind for Amino acid biosynthesis

 

Alignments for a candidate for dapC in Dyella japonica UNC79MFTsu3.2

Align Phosphoserine aminotransferase 1, chloroplastic; AtPSAT1; Phosphohydroxythreonine aminotransferase; EC 2.6.1.52 (characterized)
to candidate N515DRAFT_1430 N515DRAFT_1430 phosphoserine aminotransferase apoenzyme

Query= SwissProt::Q96255
         (430 letters)



>FitnessBrowser__Dyella79:N515DRAFT_1430
          Length = 361

 Score =  380 bits (976), Expect = e-110
 Identities = 184/358 (51%), Positives = 254/358 (70%)

Query: 72  RVFNFAAGPATLPENVLLKAQADLYNWRGSGMSVMEMSHRGKEFLSIIQKAESDLRQLLE 131
           RV+NF+AGPA +P  VL +AQ +L +W GSG SVME+SHRGK F+ + ++AE+DLR+LL+
Sbjct: 3   RVWNFSAGPAAIPTAVLERAQRELLDWNGSGASVMELSHRGKRFIGLAEQAEADLRELLK 62

Query: 132 IPQEYSVLFLQGGATTQFAALPLNLCKSDDTVDFVVTGSWGDKAVKEAKKYCKTNVIWSG 191
           IP +Y+VLFLQGGAT  FA +PLNL    D+ D++V G WG+KA  EA  Y + NV  S 
Sbjct: 63  IPADYAVLFLQGGATQHFAQIPLNLAGEGDSADYIVNGHWGEKAASEAASYVRVNVAASS 122

Query: 192 KSEKYTKVPSFEELEQTPDAKYLHICANETIHGVEFKDYPVPKNGFLVADMSSNFCSKPV 251
           ++E+Y ++P     +  P A Y+H   NETIHGVE+ D P      LVADMSSN  ++P+
Sbjct: 123 RNEQYLRLPPRASWQLDPRAAYVHYTPNETIHGVEYHDVPEVGEVPLVADMSSNILAEPL 182

Query: 252 DVSKFGVIYGGAQKNVGPSGVTIVIIRKDLIGNAQDITPVMLDYKIHDENSSLYNTPPCF 311
           DVS+FG+IY GAQKN+GPSG+ ++IIR+DL+  A      +  Y  H  N S+ NTP  +
Sbjct: 183 DVSRFGLIYAGAQKNIGPSGLVVMIIRRDLLQRAARPMAKIFRYAEHAANDSMLNTPNTW 242

Query: 312 GIYMCGLVFEDLLEQGGLKEVEKKNQRKADLLYNAIEESNGFFRCPVEKSVRSLMNVPFT 371
           G Y+ GL F+ L EQGGL+ +  +N+ KA LLY AI+ S G++R P++ + RS MNVPFT
Sbjct: 243 GWYLAGLTFQWLKEQGGLEAMAHRNRDKAGLLYQAIDGSGGYYRNPIDPAARSRMNVPFT 302

Query: 372 LEKSELEAEFIKEAAKEKMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDFQAKH 429
           L  S L+A+F+KE+    ++ LKGH+++GGMRAS+YNA+PL  V+ LV FM+DF A+H
Sbjct: 303 LHDSALDADFLKESEAAGLLALKGHKALGGMRASLYNAVPLEAVQVLVQFMRDFAARH 360


Lambda     K      H
   0.316    0.132    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 362
Number of extensions: 10
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 430
Length of database: 361
Length adjustment: 31
Effective length of query: 399
Effective length of database: 330
Effective search space:   131670
Effective search space used:   131670
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)

Align candidate N515DRAFT_1430 N515DRAFT_1430 (phosphoserine aminotransferase apoenzyme)
to HMM TIGR01364 (serC: phosphoserine transaminase (EC 2.6.1.52))

Software error:

../bin/blast/fastacmd -i /tmp/list.23703.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.23703.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.