GapMind for Amino acid biosynthesis

 

Alignments for a candidate for proB in Dyella japonica UNC79MFTsu3.2

Align glutamate 5-kinase (EC 2.7.2.11) (characterized)
to candidate N515DRAFT_3772 N515DRAFT_3772 glutamate 5-kinase

Query= BRENDA::P0A7B5
         (367 letters)



>FitnessBrowser__Dyella79:N515DRAFT_3772
          Length = 380

 Score =  274 bits (701), Expect = 3e-78
 Identities = 157/360 (43%), Positives = 220/360 (61%), Gaps = 5/360 (1%)

Query: 8   VVKLGTSVLTGGSRRLNRAHIVELVRQCAQLHAAGHRIVIVTSGAIAAGREHLGYPELPA 67
           V+K+G+++L      L   H   L       HA G ++V+V+SGA+AAGR  L    LP 
Sbjct: 17  VLKVGSNLLAADGGGLTPRHARALAAFIGDSHAQGRQVVLVSSGAVAAGRALLRERALPG 76

Query: 68  T-IASKQLLAAVGQSRLIQLWEQLFSIYGIHVGQMLLTRADMEDRERFLNARDTLRALLD 126
             +A++Q LAA+GQ+ +I LW+   S+    V Q+LLT  D+  R R+LNAR TLR LL 
Sbjct: 77  DDLAARQALAALGQAPMIALWQ---SLSPRPVAQVLLTHDDLRHRRRYLNARATLRELLL 133

Query: 127 NNIVPVINENDAVATAEIKVGDNDNLSALAAILAGADKLLLLTDQKGLYTADPRSNPQAE 186
            +++PV+NEND VA  E+K+GDNDNL+A+ A L  AD LL+ +D   LY ADPR  P A 
Sbjct: 134 LDVLPVVNENDTVAVDELKLGDNDNLAAIVAALVDADLLLIASDIDALYDADPRRVPSAV 193

Query: 187 LIKDVYGIDDALRAIAGDSVSGLGTGGMSTKLQAADVACRAGIDTIIAAGSKPGVIGDVM 246
            +  V  +   + A+AG S S +GTGGM TKL+AA  A  AG+ T++  G     +  + 
Sbjct: 194 PVPHVSTLTAEVMAMAGGSGSAVGTGGMHTKLEAAVKAGAAGVPTVLFDGRNTETVAALA 253

Query: 247 EGISVGTLFHAQATPLENRKRWIFGAPPA-GEITVDEGATAAILERGSSLLPKGIKSVTG 305
            G   GTLF A  + ++ RK W+  AP A G I VD+GA  A+    +SLLP GI    G
Sbjct: 254 AGQLHGTLFDAPRSRMQARKYWLRHAPAAPGSILVDDGAARALAGGRASLLPGGIVGADG 313

Query: 306 NFSRGEVIRICNLEGRDIAHGVSRYNSDALRRIAGHHSQEIDAILGYEYGPVAVHRDDMI 365
            F RG+++ I ++  R +A G+S+Y +  +RR+AG HS  IDA+LGY YG   VHRDD++
Sbjct: 314 EFHRGDMVEIVDVTRRPVARGLSQYGAAEVRRLAGRHSSAIDAVLGYSYGAEIVHRDDLV 373


Lambda     K      H
   0.318    0.135    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 407
Number of extensions: 20
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 367
Length of database: 380
Length adjustment: 30
Effective length of query: 337
Effective length of database: 350
Effective search space:   117950
Effective search space used:   117950
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)

Align candidate N515DRAFT_3772 N515DRAFT_3772 (glutamate 5-kinase)
to HMM TIGR01027 (proB: glutamate 5-kinase (EC 2.7.2.11))

Software error:

../bin/blast/fastacmd -i /tmp/list.16300.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.16300.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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