Align Carbamoyl-phosphate synthase small chain, chloroplastic; Carbamoyl-phosphate synthetase glutamine chain; Protein VENOSA 6; EC 6.3.5.5 (characterized)
to candidate HSERO_RS06920 HSERO_RS06920 carbamoyl phosphate synthase small subunit
Query= SwissProt::Q9LVW7 (430 letters) >FitnessBrowser__HerbieS:HSERO_RS06920 Length = 387 Score = 331 bits (849), Expect = 2e-95 Identities = 171/379 (45%), Positives = 241/379 (63%), Gaps = 10/379 (2%) Query: 58 ARLVLEDGSIWPAKSFGAPGTRIAELVFNTSLTGYQEILTDPSYAGQFVLMTNPQIGNTG 117 A L L DGS++ S GA G E+VFNT++TGYQEILTDPSY+ Q V +T P IGNTG Sbjct: 12 AVLALADGSVFQGFSIGAAGNTTGEVVFNTAMTGYQEILTDPSYSRQIVTLTYPHIGNTG 71 Query: 118 VNPDDEESGQCFLTGLVIRNLSISTSNWRCTKTLADYLTERDIMGVYDLDTRAITRRLRE 177 VN +D E+ Q GL+I++L SN+R ++L+DYL E +I+ + +DTR +TR LRE Sbjct: 72 VNREDVEASQIHAAGLIIKDLPRLLSNFRSQQSLSDYLKEGNIVSIAGIDTRKLTRILRE 131 Query: 178 DGSLIGVL---STEQSKTDDELLQMSRSWD-IVGIDLISDVSCKSPYEWVDKTNAEWDFN 233 G+ G + + + + L+++R++ + G+DL VS + Y W T EW Sbjct: 132 KGAQNGAIVAGEADIAAATAKALELARAFPGLAGMDLAKVVSTQKAYNW---TETEWRLG 188 Query: 234 TN--SRDGKSYKVIAYDFGIKQNILRRLSSYGCQITVVPSTFPAAEALKMNPDGILFSNG 291 + + V+A+D+G+K NILR L+ GC++TV+P+ AAEAL +NPDGI SNG Sbjct: 189 RGYGQQITPKFHVVAFDYGVKYNILRMLAERGCKVTVLPAQATAAEALALNPDGIFLSNG 248 Query: 292 PGDPSAVPYAVETVKELLGK-VPVYGICMGHQLLGQALGGKTFKMKFGHHGGNHPVRNNR 350 PGDP YA+ KEL+ + +P +GIC+GHQ++ A G KT KMKFGHHG NHPV++ Sbjct: 249 PGDPEPCDYAIAASKELIERGIPTFGICLGHQIMALASGAKTLKMKFGHHGANHPVQDLD 308 Query: 351 TGQVEISAQNHNYAVDPASLPGGVEVTHVNLNDGSCAGLSFPEMNVMSLQYHPEASPGPH 410 + QV I++QNH +AVD A+LP VTHV+L DGS G + Q HPEASPGPH Sbjct: 309 SKQVMITSQNHGFAVDQATLPANCRVTHVSLFDGSLQGFERTDKPAFCFQGHPEASPGPH 368 Query: 411 DSDNAFREFIELMKRSKQS 429 D F +F+ +M++ + + Sbjct: 369 DIAPLFDKFVAMMEKKQNA 387 Lambda K H 0.316 0.134 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 431 Number of extensions: 14 Number of successful extensions: 4 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 430 Length of database: 387 Length adjustment: 31 Effective length of query: 399 Effective length of database: 356 Effective search space: 142044 Effective search space used: 142044 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 50 (23.9 bits)
Align candidate HSERO_RS06920 HSERO_RS06920 (carbamoyl phosphate synthase small subunit)
to HMM TIGR01368 (carA: carbamoyl-phosphate synthase, small subunit (EC 6.3.5.5))
../bin/blast/fastacmd -i /tmp/list.6912.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.6912.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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