Align acetolactate synthase (subunit 1/2) (EC 2.2.1.6) (characterized)
to candidate HSERO_RS08655 HSERO_RS08655 acetolactate synthase
Query= BRENDA::P00894 (163 letters) >FitnessBrowser__HerbieS:HSERO_RS08655 Length = 163 Score = 192 bits (487), Expect = 3e-54 Identities = 94/163 (57%), Positives = 130/163 (79%), Gaps = 1/163 (0%) Query: 1 MRRILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVGDEKVLEQI 60 MR I+SVLLENE+GALSRV+GLFS RGYNIE+LTVAPT+D TLSRMTI T G + V+EQI Sbjct: 1 MRHIISVLLENEAGALSRVVGLFSARGYNIETLTVAPTEDSTLSRMTIVTSGSDDVIEQI 60 Query: 61 EKQLHKLVDVLRVSELGQGAHVEREIMLVKIQASGYGRDEVKRNTEIFRGQIIDVTPSLY 120 K L++L++V++V +L +GAH+ERE+ML+K++A G R+E+KR +IFRG+IIDVT Y Sbjct: 61 TKHLNRLIEVVKVVDLTEGAHIERELMLIKVRAVGKEREEMKRTADIFRGRIIDVTEKTY 120 Query: 121 TVQLAGTSGKLDAFLASIRDVAKIVEVARSGVVGLSRGDKIMR 163 T++L G KLDAF+ ++ D I+E R+G G+ RG++I++ Sbjct: 121 TIELTGAKSKLDAFIDAL-DRTAILETVRTGGSGIGRGERILK 162 Lambda K H 0.318 0.136 0.360 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 116 Number of extensions: 4 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 163 Length of database: 163 Length adjustment: 18 Effective length of query: 145 Effective length of database: 145 Effective search space: 21025 Effective search space used: 21025 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 43 (21.2 bits)
Align candidate HSERO_RS08655 HSERO_RS08655 (acetolactate synthase)
to HMM TIGR00119 (ilvN: acetolactate synthase, small subunit (EC 2.2.1.6))
../bin/blast/fastacmd -i /tmp/list.15786.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.15786.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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