Align 3-isopropylmalate dehydratase small subunit 1; Alpha-IPM isomerase 1; IPMI 1; Isopropylmalate isomerase 1; EC 4.2.1.33 (characterized)
to candidate HSERO_RS16505 HSERO_RS16505 3-isopropylmalate dehydratase small subunit
Query= SwissProt::P04787 (201 letters) >FitnessBrowser__HerbieS:HSERO_RS16505 Length = 215 Score = 243 bits (621), Expect = 1e-69 Identities = 119/201 (59%), Positives = 150/201 (74%), Gaps = 9/201 (4%) Query: 4 KFTQHTGLVVPLDAANVDTDAIIPKQFLQKVTRTGFGAHLFNDWRFLD------EKGQQP 57 KF H GLV PLD ANVDTDAIIPKQFL+ + R+GFG +LF++WR+LD + ++P Sbjct: 3 KFIVHEGLVAPLDRANVDTDAIIPKQFLKSIKRSGFGPNLFDEWRYLDHGEPGMDNSKRP 62 Query: 58 -NPEFVLNFPEYQGASILLARENFGCGSSREHAPWALTDYGFKVVIAPSFADIFYGNSFN 116 NP+FVLN YQG+SILL+R+NFGCGSSREHAPWAL +GF+ VIAPSFADIF+ N + Sbjct: 63 LNPDFVLNQERYQGSSILLSRKNFGCGSSREHAPWALDQFGFRAVIAPSFADIFFNNCYK 122 Query: 117 NQLLPVTLSDAQVDELFALVKANPGIKFEVDLEAQVVKA--GDKTYSFKIDDFRRHCMLN 174 N LLP+ L++ QVD LF VKA PG + +DLE Q+V G +TY F+I +FR++C+LN Sbjct: 123 NGLLPIVLTEQQVDHLFNEVKAFPGYRLVIDLEKQIVSTTNGSQTYPFEISEFRKYCLLN 182 Query: 175 GLDSIGLTLQHEDAIAAYENK 195 G D IGLTL+ D I AYE K Sbjct: 183 GFDDIGLTLRKADTIRAYEEK 203 Lambda K H 0.321 0.138 0.416 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 183 Number of extensions: 5 Number of successful extensions: 3 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 201 Length of database: 215 Length adjustment: 21 Effective length of query: 180 Effective length of database: 194 Effective search space: 34920 Effective search space used: 34920 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 45 (21.9 bits)
Align candidate HSERO_RS16505 HSERO_RS16505 (3-isopropylmalate dehydratase small subunit)
to HMM TIGR00171 (leuD: 3-isopropylmalate dehydratase, small subunit (EC 4.2.1.33))
../bin/blast/fastacmd -i /tmp/list.12593.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.12593.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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