Align dihydrodipicolinate reductase; EC 1.3.1.26 (characterized)
to candidate HSERO_RS03030 HSERO_RS03030 dihydrodipicolinate reductase
Query= CharProtDB::CH_002128 (273 letters) >FitnessBrowser__HerbieS:HSERO_RS03030 Length = 268 Score = 291 bits (744), Expect = 1e-83 Identities = 155/263 (58%), Positives = 190/263 (72%), Gaps = 1/263 (0%) Query: 6 IRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSS 65 + +A+AGA GRMGR LI+A L + +QL AL+ S +G+DAG G TGV ++S Sbjct: 4 LNIAVAGASGRMGRMLIEAILNADDLQLAGALDTPTSPSIGTDAGLFLGKA-TGVLIESD 62 Query: 66 LDAVKDDFDVFIDFTRPEGTLNHLAFCRQHGKGMVIGTTGFDEAGKQAIRDAAADIAIVF 125 L DV IDFTRPEGTL HL +C HG +VIGTTGF+ GK AI A AI+ Sbjct: 63 LARGLAKADVLIDFTRPEGTLKHLEYCAAHGVKVVIGTTGFEPEGKAAIAAYAEKTAIMA 122 Query: 126 AANFSVGVNVMLKLLEKAAKVMGDYTDIEIIEAHHRHKVDAPSGTALAMGEAIAHALDKD 185 A N SVGVNV +KLLE AAK DIEIIEAHHR KVDAPSGTAL MGE IA AL K Sbjct: 123 APNMSVGVNVTMKLLEMAAKNFSHGYDIEIIEAHHRFKVDAPSGTALKMGEVIADALGKK 182 Query: 186 LKDCAVYSREGHTGERVPGTIGFATVRAGDIVGEHTAMFADIGERLEITHKASSRMTFAN 245 L D AVY+REG TGER P +IGFATVR GDI+G+HT +FA IGER+EI+HK+SSR+++A Sbjct: 183 LDDVAVYAREGVTGERDPSSIGFATVRGGDIIGDHTVLFAGIGERIEISHKSSSRVSYAM 242 Query: 246 GAVRSALWLSGKESGLFDMRDVL 268 G++R+A +L+ KE+GL+DM+DVL Sbjct: 243 GSLRAARYLADKETGLYDMQDVL 265 Lambda K H 0.319 0.135 0.383 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 268 Number of extensions: 15 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 273 Length of database: 268 Length adjustment: 25 Effective length of query: 248 Effective length of database: 243 Effective search space: 60264 Effective search space used: 60264 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 47 (22.7 bits)
Align candidate HSERO_RS03030 HSERO_RS03030 (dihydrodipicolinate reductase)
to HMM TIGR00036 (dapB: 4-hydroxy-tetrahydrodipicolinate reductase (EC 1.17.1.8))
../bin/blast/fastacmd -i /tmp/list.28088.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.28088.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.