Align Aspartate-semialdehyde dehydrogenase; ASA dehydrogenase; ASADH; Aspartate-beta-semialdehyde dehydrogenase; EC 1.2.1.11 (characterized)
to candidate HSERO_RS16495 HSERO_RS16495 aspartate-semialdehyde dehydrogenase
Query= SwissProt::Q51344 (370 letters) >FitnessBrowser__HerbieS:HSERO_RS16495 Length = 370 Score = 521 bits (1343), Expect = e-153 Identities = 257/368 (69%), Positives = 299/368 (81%), Gaps = 2/368 (0%) Query: 1 MKRVGLIGWRGMVGSVLMQRMLEERDFDLIEPVFFTTSNVGGQGPEVGKDIAPLKDAYSI 60 MK VGL+GWRGMVGSVLMQRM +E DFD IEPVFF+TSN GG+ P K LKDA SI Sbjct: 1 MKLVGLVGWRGMVGSVLMQRMQDEGDFDHIEPVFFSTSNAGGKAPSFAKKETTLKDANSI 60 Query: 61 DELKTLDVILTCQGGDYTSEVFPKLREAGWQGYWIDAASSLRMEDDAVIVLDPVNRKVID 120 DELK D+I+T QGGDYT+E+FPKLR AGW GYWIDAASSLRM+DDAVIVLDPVN VI Sbjct: 61 DELKKCDIIITAQGGDYTNEIFPKLRAAGWDGYWIDAASSLRMKDDAVIVLDPVNNNVIK 120 Query: 121 QALDAGTRNYIGGNCTVSLMLMALGGLFDAGLVEWMSAMTYQAASGAGAQNMRELLKQMG 180 AL G +NYIGGNCT S++LM +GGLF GLVEW+S+MTYQAASG GA +MRELLK MG Sbjct: 121 DALAKGVKNYIGGNCTNSILLMGVGGLFKEGLVEWVSSMTYQAASGGGANHMRELLKGMG 180 Query: 181 AAHASVADDLANPASAILDIDRKVAETLRSEAFPTEHFGAPLGGSLIPWIDKELPNGQSR 240 +A+VAD+LA P+SAILDIDRKVA+T+R E PTE FGAPL G LIPWID +L NGQS+ Sbjct: 181 VINAAVADELATPSSAILDIDRKVAKTIR-EDVPTEFFGAPLAGGLIPWIDAQLENGQSK 239 Query: 241 EEWKAQAETNKILARFKNPIPVDGICVRVGAMRCHSQALTIKLNKDVPLTDIEGLISQHN 300 EEWK QAE NKIL + IPVDG+CVR+GAMRCHS ALTIKL +D+PL +IE +I N Sbjct: 240 EEWKGQAEVNKILGN-EQIIPVDGLCVRIGAMRCHSLALTIKLKRDLPLAEIESIIRAGN 298 Query: 301 PWVKLVPNHREVSVRELTPAAVTGTLSVPVGRLRKLNMGSQYLGAFTVGDQLLWGAAEPL 360 WVK VPN R ++V+ELTPA++TG L + VGR+RKLN G +Y+ AF +GDQLLWGAAEPL Sbjct: 299 QWVKWVPNDRAITVKELTPASITGGLEIGVGRVRKLNQGPEYISAFVIGDQLLWGAAEPL 358 Query: 361 RRMLRILL 368 RRMLRI+L Sbjct: 359 RRMLRIIL 366 Lambda K H 0.319 0.136 0.409 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 513 Number of extensions: 14 Number of successful extensions: 3 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 370 Length of database: 370 Length adjustment: 30 Effective length of query: 340 Effective length of database: 340 Effective search space: 115600 Effective search space used: 115600 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 49 (23.5 bits)
Align candidate HSERO_RS16495 HSERO_RS16495 (aspartate-semialdehyde dehydrogenase)
to HMM TIGR01745 (asd: aspartate-semialdehyde dehydrogenase (EC 1.2.1.11))
../bin/blast/fastacmd -i /tmp/list.17451.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.17451.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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