GapMind for Amino acid biosynthesis

 

Alignments for a candidate for argA in Herbaspirillum seropedicae SmR1

Align amino-acid N-acetyltransferase (EC 2.3.1.1) (characterized)
to candidate HSERO_RS17320 HSERO_RS17320 amino acid acetyltransferase

Query= BRENDA::P22567
         (432 letters)



>FitnessBrowser__HerbieS:HSERO_RS17320
          Length = 440

 Score =  410 bits (1055), Expect = e-119
 Identities = 218/431 (50%), Positives = 280/431 (64%), Gaps = 1/431 (0%)

Query: 3   DYVNWLRHASPYINSHRDRTFVVMLPGEGVEHPNFGNIVHDLVLLHSLGARLVLVHGSRP 62
           ++VNWLR  +PY+++ R +TFVV  PGE V   +   +  DL LLH+LG R+V+VHGSRP
Sbjct: 9   EFVNWLRSVAPYVHAFRGKTFVVAFPGELVTAGDLQVLAQDLSLLHALGIRVVVVHGSRP 68

Query: 63  QIEARLAARGLAPRYHRDLRVTDAPTLECVIDAVGSLRIAIEARLSMDMAASPMQGARLR 122
           Q+  +LA R +  R+H  LRV D+  LEC  +A G LR+ IEA  S  +  +PM  + +R
Sbjct: 69  QVAEQLALRNVEARFHNGLRVADSAALECAKEAAGELRLDIEAAFSQGLPNTPMAHSAIR 128

Query: 123 VAGGNLVTARPIGVVEGVDYHHTGEVRRIDRKGIGRLLDERSIVLLSPLGYSPTGEIFNL 182
           V  GN VTARP+GV++GVD   TG VR+I    I  +++   IVLLSPLG+SPTGE FNL
Sbjct: 129 VISGNFVTARPMGVIDGVDLQLTGVVRKIAADVIQPIMNAGGIVLLSPLGFSPTGEAFNL 188

Query: 183 ACEDVAMRAAIDLEAEKLILYGAEQGLLDASGKLVRELRPQQVPAHLQRLGNSYQAEL-L 241
             EDVA+ AAI L AEKLI       + DA G  +REL   Q  A L     S +A   L
Sbjct: 189 TMEDVAVSAAIALRAEKLIFLSETPMMTDAGGAEIRELSSHQAEAVLSAGFLSPEAAFYL 248

Query: 242 DAAAQACRAGVKRSHIVSYTEDGALLSELFTRTGNGTLVAQEQFEQLREAGIEDVGGLIE 301
            +  +AC AGV R+HIV +  DG+ L ELFT  G GT+V  E  E LR+A IEDVGG+++
Sbjct: 249 ASVVKACNAGVSRAHIVPFATDGSALLELFTHDGVGTMVTYENLESLRQATIEDVGGILK 308

Query: 302 LIRPLEEQGILVRRSREVLEREIEQFSIVEREGLIIACAALYPIADSEAGELACLAVNPE 361
           LI PLE  G LV+R RE++EREI  FS++E + +I  CAALYP      GE+ACL VNPE
Sbjct: 309 LIEPLEADGTLVKRGRELIEREIHYFSVIEHDNVIFGCAALYPFPKERMGEMACLTVNPE 368

Query: 362 YRHGGRGDELLERIEERARGLGLKTLFVLTTRTAHWFRERGFQPSSVERLPAARASLYNF 421
            +  G GD +L+ IE RAR  GL  LFVLTTRT+HWF +RGF  + V  LP  R  +YN+
Sbjct: 369 VQGQGDGDRILKHIETRAREAGLTKLFVLTTRTSHWFLKRGFVLAGVNDLPQDRQQIYNW 428

Query: 422 QRNSQVFEKSL 432
           QR SQV  K+L
Sbjct: 429 QRKSQVLIKNL 439


Lambda     K      H
   0.321    0.138    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 471
Number of extensions: 15
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 432
Length of database: 440
Length adjustment: 32
Effective length of query: 400
Effective length of database: 408
Effective search space:   163200
Effective search space used:   163200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)

Align candidate HSERO_RS17320 HSERO_RS17320 (amino acid acetyltransferase)
to HMM TIGR01890 (argA: amino-acid N-acetyltransferase (EC 2.3.1.1))

Software error:

../bin/blast/fastacmd -i /tmp/list.9567.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.9567.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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