Align acetylglutamate kinase (EC 2.7.2.8) (characterized)
to candidate HSERO_RS21495 HSERO_RS21495 acetylglutamate kinase
Query= BRENDA::Q9HTN2 (301 letters) >FitnessBrowser__HerbieS:HSERO_RS21495 Length = 297 Score = 335 bits (860), Expect = 6e-97 Identities = 164/285 (57%), Positives = 218/285 (76%), Gaps = 5/285 (1%) Query: 12 AKVLSEALPYIRRFVGKTLVIKYGGNAMESEELKAGFARDVVLMKAVGINPVVVHGGGPQ 71 A++L+EALPYIR+F GKT+V+KYGGNAM E LK GFARDV+L+K VG+NPVVVHGGGPQ Sbjct: 14 AEILAEALPYIRKFHGKTIVVKYGGNAMTEESLKHGFARDVILLKLVGMNPVVVHGGGPQ 73 Query: 72 IGDLLKRLSIESHFIDGMRVTDAATMDVVEMVLGGQVNKDIVNLINRHGGSAIGLTGKDA 131 I LK++ + F+ GMR+TD TM+VVE VLGG+V +DIV LIN +GG A+GLTGKD Sbjct: 74 IDAALKKIGKQGTFVQGMRITDEETMEVVEWVLGGEVQQDIVMLINHYGGQAVGLTGKDG 133 Query: 132 ELIRAKKLTVTRQTPEMTKP-EIIDIGHVGEVTGVNVGLLNMLVKGDFIPVIAPIGVGSN 190 LIRA+K+ Q P+ P +DIG+VGE+ +N ++ L FIP+I+PIG G + Sbjct: 134 GLIRARKM----QMPDKEHPGAFLDIGYVGEIEAINPAVVKALQDDAFIPIISPIGFGDD 189 Query: 191 GESYNINADLVAGKVAEALKAEKLMLLTNIAGLMDKQGQVLTGLSTEQVNELIADGTIYG 250 G++YNINAD+VAGK+AE L AEKL+++TNIAG+ DK G +LT LS +++E+ ADGTI G Sbjct: 190 GQAYNINADVVAGKIAEILHAEKLIMMTNIAGVQDKAGNLLTDLSAREIDEMFADGTISG 249 Query: 251 GMLPKIRCALEAVQGGVTSAHIIDGRVPNAVLLEIFTDSGVGTLI 295 GMLPKI AL+A + GV + HIIDGR+ +++LLE+ T+ GT+I Sbjct: 250 GMLPKISSALDAAKSGVNTVHIIDGRIEHSLLLEVLTEQAFGTMI 294 Lambda K H 0.318 0.138 0.381 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 338 Number of extensions: 11 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 301 Length of database: 297 Length adjustment: 27 Effective length of query: 274 Effective length of database: 270 Effective search space: 73980 Effective search space used: 73980 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 48 (23.1 bits)
Align candidate HSERO_RS21495 HSERO_RS21495 (acetylglutamate kinase)
to HMM TIGR00761 (argB: acetylglutamate kinase (EC 2.7.2.8))
../bin/blast/fastacmd -i /tmp/list.17032.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.17032.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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