Align acetylornithine deacetylase (EC 3.5.1.16) (characterized)
to candidate HSERO_RS13940 HSERO_RS13940 acetylornithine deacetylase
Query= ecocyc::ACETYLORNDEACET-MONOMER (383 letters) >FitnessBrowser__HerbieS:HSERO_RS13940 Length = 390 Score = 174 bits (440), Expect = 5e-48 Identities = 121/351 (34%), Positives = 172/351 (49%), Gaps = 22/351 (6%) Query: 31 SNADLITLLADWFKDLGFNVEVQPVPGTRNKFNMLASI--------GQGAGGLLLAGHTD 82 SN +LIT + D + G + + K N+ A++ G GG++L+GHTD Sbjct: 20 SNLELITTVRDSLQQQGVASWLAHNKD-KTKANLFATLPATAGPHAGSTEGGIVLSGHTD 78 Query: 83 TVPFDDGRWTRDPFTLTEHDGKLYGLGTADMKGFFAFILDALRDVDVTKLKKPLYILATA 142 VP D +W DPF LTE DG LY G+ DMKGF A L + + KP+++ + Sbjct: 79 VVPVDGQKWDTDPFKLTEKDGALYARGSCDMKGFIATALALVPEYLAMPRVKPIHLAFSF 138 Query: 143 DEETSMAGARYFAE---TTALRPDCAIIGEPTSLQPVRAHKGHISNAIRIQGQSGHSSDP 199 DEE GA E ++ D ++GEPTS+ V AHKG A ++ G+S HSS Sbjct: 139 DEEIGCIGAPVMLEEIVKRGIKVDGCVVGEPTSMNVVVAHKGINVFACKVHGKSAHSSLT 198 Query: 200 ARGVNAIELMHDAIGHILQLRDNLKERYHYEA-FTVPYPTLNLGHIHGGDASNRICACCE 258 +G NAIE I I D K Y+ F VP+ T+ I GG A N I CE Sbjct: 199 PQGCNAIEHAARLICAIRDFADGYKANGPYDQFFDVPFSTMTTNQIRGGIAVNTIPELCE 258 Query: 259 LHMDIRPLPGMTLNELNGLLNDALAPV------SERWPGRLTVDELHPPIPGYECPPNHQ 312 + R LPGM++ ++ ++ +A V +E R+ +D P E Sbjct: 259 FTYEFRNLPGMSVADIQAQIDKYIAEVLLPKMRTEFPDARVEIDNF-AGSPALEAVEQAA 317 Query: 313 LVEVVEKLLG-AKTEVVNYCTEAPFIQTL-CPTLVLGPGSINQAHQPDEYL 361 + E+V L G +T V Y TEA Q + PT+V GPG I AH+P+E++ Sbjct: 318 ITELVRALTGDRQTRKVAYGTEAGLFQQIGIPTIVCGPGDIGNAHKPNEFV 368 Lambda K H 0.320 0.139 0.430 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 328 Number of extensions: 13 Number of successful extensions: 4 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 383 Length of database: 390 Length adjustment: 30 Effective length of query: 353 Effective length of database: 360 Effective search space: 127080 Effective search space used: 127080 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 50 (23.9 bits)
Align candidate HSERO_RS13940 HSERO_RS13940 (acetylornithine deacetylase)
to HMM TIGR01892 (argE: acetylornithine deacetylase (ArgE) (EC 3.5.1.16))
../bin/blast/fastacmd -i /tmp/list.30653.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.30653.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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