Align Gamma-glutamyl phosphate reductase; GPR; Glutamate-5-semialdehyde dehydrogenase; Glutamyl-gamma-semialdehyde dehydrogenase; GSA dehydrogenase; EC 1.2.1.41 (characterized)
to candidate HSERO_RS02965 HSERO_RS02965 gamma-glutamyl phosphate reductase
Query= SwissProt::P07004 (417 letters) >FitnessBrowser__HerbieS:HSERO_RS02965 Length = 422 Score = 370 bits (951), Expect = e-107 Identities = 187/415 (45%), Positives = 278/415 (66%), Gaps = 1/415 (0%) Query: 2 LEQMGIAAKQASYKLAQLSSREKNRVLEKIADELEAQSEIILNANAQDVADARANGLSEA 61 + ++G A+ AS +A+ + KN+ L IA + ++ + ANA D+ ARANGL+EA Sbjct: 8 MNRIGQQARAASRAMARADTAAKNQALLLIAAAIRRDADALRAANALDLEAARANGLAEA 67 Query: 62 MLDRLALTPARLKGIADDVRQVCNLADPVGQVIDGGVLDSGLRLERRRVPLGVIGVIYEA 121 MLDRL L+ + +A+ + Q+ +L DP+G++ + +G+++ + RVPLGVIG+IYEA Sbjct: 68 MLDRLTLSDKAIATMAEGLEQIASLPDPIGEISNMKYRPTGIQVGQMRVPLGVIGIIYEA 127 Query: 122 RPNVTVDVASLCLKTGNAVILRGGKETCRTNAATVAVIQDALKSCGLPAGAVQAIDNPDR 181 RPNVTVD A LC+K+GNA ILRGG E N A ++++ L GLP AVQ ++ DR Sbjct: 128 RPNVTVDAAGLCIKSGNATILRGGSEAIHCNQALAKLVKEGLAGAGLPEQAVQVVETTDR 187 Query: 182 ALVSEMLRMDKYIDMLIPRGGAGLHKLCREQSTIPVITGGIGVCHIYVDESVEIAEALKV 241 A V ++ M +Y+D+++PRGG GL + +++ +P+I G+CH+Y+D+ + +AL V Sbjct: 188 AAVGALITMQEYVDVIVPRGGKGLIERLMKEAKVPMIKHLDGICHVYIDDKADTRKALDV 247 Query: 242 IVNAKTQRPSTCNTVETLLVNKNIADSFLPALSKQMAESGVTLHADAAALAQLQAGPAKV 301 NAK R TCNT+ETLLV +NIA + LP LS+ V L DA A A++ AG + Sbjct: 248 AFNAKCHRYGTCNTMETLLVARNIAAAILPPLSELYRVKEVELRCDAEA-AEILAGYPLL 306 Query: 302 VAVKAEEYDDEFLSLDLNVKIVSDLDDAIAHIREHGTQHSDAILTRDMRNAQRFVNEVDS 361 A E++D E+L+ L VK+V+D+D+AI HI H +QH+++I+T D A RF+ EVDS Sbjct: 307 KAATEEDWDTEYLAPILAVKVVADMDEAIEHINRHSSQHTESIITEDYTRAMRFLREVDS 366 Query: 362 SAVYVNASTRFTDGGQFGLGAEVAVSTQKLHARGPMGLEALTTYKWIGIGDYTIR 416 ++V VNASTRF DG ++GLGAE+ +S KLHARGP+GLE LT+ K+I +G+ +R Sbjct: 367 ASVMVNASTRFADGFEYGLGAEIGISNDKLHARGPVGLEGLTSLKYIVLGNGQVR 421 Lambda K H 0.317 0.133 0.369 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 427 Number of extensions: 12 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 417 Length of database: 422 Length adjustment: 32 Effective length of query: 385 Effective length of database: 390 Effective search space: 150150 Effective search space used: 150150 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 50 (23.9 bits)
Align candidate HSERO_RS02965 HSERO_RS02965 (gamma-glutamyl phosphate reductase)
to HMM TIGR00407 (proA: glutamate-5-semialdehyde dehydrogenase (EC 1.2.1.41))
../bin/blast/fastacmd -i /tmp/list.28828.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.28828.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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