Align Phosphoserine phosphatase; PSP; PSPase; O-phosphoserine phosphohydrolase; EC 3.1.3.3 (characterized)
to candidate HSERO_RS15175 HSERO_RS15175 phosphoserine phosphatase
Query= SwissProt::Q12A06 (236 letters) >FitnessBrowser__HerbieS:HSERO_RS15175 Length = 294 Score = 239 bits (609), Expect = 6e-68 Identities = 126/218 (57%), Positives = 159/218 (72%), Gaps = 5/218 (2%) Query: 18 DLKLSDFKLIAFDMDSTLINIECVDEIADAAGRKAEVAAITEAAMRGEISDYKESLRQRV 77 D KL+DF+L+A DMDSTLI IEC+DEIAD G K +VA ITEAAMRGEI ++ ESL +RV Sbjct: 81 DRKLADFRLVAMDMDSTLITIECIDEIADMQGLKPQVAEITEAAMRGEI-EFNESLTRRV 139 Query: 78 ALLKGVSVASMDEVYRTRLRLNPGAARLVQACKDAGLKVLLVSGGFTFFTDRIRDELGID 137 ALLKG+ ++ VY RL+L+PGA +++A + AGLK LLVSGGFTFFTDR++ L +D Sbjct: 140 ALLKGLDAGALQRVYDERLQLSPGAENMLKAVQAAGLKTLLVSGGFTFFTDRMKARLNLD 199 Query: 138 YTRSNVLETTDGLLTGRMVDQPWGDICDGEEKRKMLLETCGQLGISPRQAIAMGDGANDL 197 YT +N LE DG LTG++V G I + +EKR + C ++G P QAI MGDGANDL Sbjct: 200 YTHANTLEVVDGKLTGKVV----GGIVNADEKRATVERVCREIGAEPTQAIVMGDGANDL 255 Query: 198 PMMGEAGLSVAYHAKPRVREQAMVAINEGGLDRLLELV 235 MMG +GLSVA+ AKP VR QA V +N GLD +L L+ Sbjct: 256 RMMGISGLSVAFRAKPVVRAQASVGLNFVGLDGILNLL 293 Lambda K H 0.319 0.136 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 216 Number of extensions: 10 Number of successful extensions: 3 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 236 Length of database: 294 Length adjustment: 25 Effective length of query: 211 Effective length of database: 269 Effective search space: 56759 Effective search space used: 56759 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 47 (22.7 bits)
Align candidate HSERO_RS15175 HSERO_RS15175 (phosphoserine phosphatase)
to HMM TIGR00338 (serB: phosphoserine phosphatase SerB (EC 3.1.3.3))
../bin/blast/fastacmd -i /tmp/list.9833.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.9833.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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