Align Aspartate kinase; Aspartokinase; EC 2.7.2.4 (characterized)
to candidate HSERO_RS10695 HSERO_RS10695 aspartate kinase
Query= SwissProt::C3JXY0 (413 letters) >FitnessBrowser__HerbieS:HSERO_RS10695 Length = 417 Score = 515 bits (1327), Expect = e-151 Identities = 270/417 (64%), Positives = 330/417 (79%), Gaps = 12/417 (2%) Query: 1 MALIVQKFGGTSVGSVERIEQVADKVKKFRDAGDDLVVVLSAMSGETNRLIDLAKAISGD 60 MAL V K+GGTS+GS+ERI+ VA +V K+ DAG +VVV SAMSGETNRL+ +AK I Sbjct: 1 MALYVHKYGGTSMGSIERIQNVAKRVAKWHDAGHQIVVVPSAMSGETNRLLGMAKEIMA- 59 Query: 61 QQPLPRELDVIVSTGEQVTIALLAMALNKRGVPAVSYTGSQVRILTDSAHTKARILQIDD 120 QP RELD++ STGEQV++ALLA+AL G AVSY G QV I TDSA TKARI IDD Sbjct: 60 -QPDGRELDMLASTGEQVSVALLAIALQALGKQAVSYAGWQVPIKTDSAFTKARIRSIDD 118 Query: 121 QKIRTDLKAGRVVVVAGFQGVDEQGNITTLGRGGSDTTGVALAAALKADECQIYTDVDGV 180 K+R DL AG++V++ GFQGVD GNITTLGRGGSDT+ VA+AAA+KA EC IYTDVDGV Sbjct: 119 AKVRKDLNAGKIVIITGFQGVDADGNITTLGRGGSDTSAVAVAAAIKAAECLIYTDVDGV 178 Query: 181 YTTDPRVVSVAQRLDKITFEEMLEMASLGSKVLQIRAVEFAGKYNVPLRVLHSFKE---- 236 YTTDPRVVS A+RL +TFEEMLEMASLGSKVLQIR+VEFAG Y +P RVL S + Sbjct: 179 YTTDPRVVSEARRLKTVTFEEMLEMASLGSKVLQIRSVEFAGNYKMPTRVLSSLTDPLTP 238 Query: 237 -----GPGTLITIDEEESMEQPIISGIAFNRDEAKLTIRGVPDTPGVAFKILGPISGANI 291 GTLI+ +E+++MEQ I+GIAF+RDEAK+T+ GVPD PG+A++ILGP++ ANI Sbjct: 239 LAEEAASGTLISFEEDKNMEQATITGIAFSRDEAKITVLGVPDRPGIAYQILGPVADANI 298 Query: 292 EVDMIVQNVSHDNTTDFTFTVHRNEYDAAERILQNTAK-EIGAREVVGDTKIAKVSIVGV 350 EVDMI+QN S + TDFTFTV R EY A +L N+ K IGA + GDTK++KVS+VGV Sbjct: 299 EVDMIIQNQSVEGKTDFTFTVPRGEYAKAVEVLNNSVKAHIGAAAINGDTKVSKVSVVGV 358 Query: 351 GMRSHAGVASRMFEALAKESINIQMISTSEIKVSVVIEEKYLELAVRALHTAFELDA 407 GMRSH G+AS+MF L++E +NIQMISTSEIK+SV+I+EKY+ELAVRALH AF+LD+ Sbjct: 359 GMRSHVGIASQMFRTLSEEGVNIQMISTSEIKISVLIDEKYMELAVRALHKAFDLDS 415 Lambda K H 0.316 0.133 0.357 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 507 Number of extensions: 18 Number of successful extensions: 4 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 413 Length of database: 417 Length adjustment: 31 Effective length of query: 382 Effective length of database: 386 Effective search space: 147452 Effective search space used: 147452 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 50 (23.9 bits)
Align candidate HSERO_RS10695 HSERO_RS10695 (aspartate kinase)
to HMM TIGR00657 (aspartate kinase (EC 2.7.2.4))
../bin/blast/fastacmd -i /tmp/list.6689.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.6689.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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