Align acetohydroxyacid synthase subunit B (EC 2.2.1.6) (characterized)
to candidate HSERO_RS08650 HSERO_RS08650 acetolactate synthase
Query= metacyc::MONOMER-18810 (585 letters) >FitnessBrowser__HerbieS:HSERO_RS08650 Length = 572 Score = 874 bits (2258), Expect = 0.0 Identities = 420/571 (73%), Positives = 491/571 (85%) Query: 15 AAPEMIGAEILVHALAEEGVEYVWGYPGGAVLYIYDELHKQTKFEHILVRHEQAAVHAAD 74 +A ++ GA+ILV LAEEGVE+V+GYPGGAVLYIYD + KQ KF+HILVRHEQAAVHAAD Sbjct: 2 SAEQLTGADILVRCLAEEGVEHVFGYPGGAVLYIYDAIFKQDKFQHILVRHEQAAVHAAD 61 Query: 75 GYARATGKVGVALVTSGPGVTNAVTGIATAYLDSIPMVVITGNVPTHAIGQDAFQECDTV 134 Y+R++ KVGVA+VTSGPGVTNAVTG+ATAY+DSIPMVVI+G VP+ AIGQDAFQECDTV Sbjct: 62 AYSRSSQKVGVAIVTSGPGVTNAVTGLATAYMDSIPMVVISGQVPSTAIGQDAFQECDTV 121 Query: 135 GITRPIVKHNFLVKDVRDLAATIKKAFFIAATGRPGPVVVDIPKDVSRNACKYEYPKSID 194 GITRP VKHNFLVKDV+DLA T+KKAF+IA TGRPGPV+VDIPKD++ + C Y YPK+++ Sbjct: 122 GITRPCVKHNFLVKDVKDLAETVKKAFYIATTGRPGPVLVDIPKDITMHTCAYAYPKAVE 181 Query: 195 MRSYNPVNKGHSGQIRKAVALLQGAERPYIYTGGGVVLANASDELRQLAALTGHPVTNTL 254 MRSY PV+KGHSGQIRKA+ LL AERP IYTGGG++LANA+ EL +L G+P TNTL Sbjct: 182 MRSYKPVDKGHSGQIRKALQLLLSAERPMIYTGGGIILANAAPELNKLVDRLGYPCTNTL 241 Query: 255 MGLGAFPGTSKQFVGMLGMHGTYEANMAMQNCDVLIAIGARFDDRVIGNPAHFTSQARKI 314 MGLGA+ +S +FVGM GMHGTYEANMAMQ+CDVLIAIGARFDDRVIGNP HF S ARKI Sbjct: 242 MGLGAYRSSSDKFVGMPGMHGTYEANMAMQHCDVLIAIGARFDDRVIGNPKHFASHARKI 301 Query: 315 IHIDIDPSSISKRVKVDIPIVGNVKDVLQELIAQIKASDIKPKREALAKWWEQIEQWRSV 374 IHIDIDPSSISKRVKVDIPIVGNVKDVLQEL++Q+ A++ + AL WW+QI +WR Sbjct: 302 IHIDIDPSSISKRVKVDIPIVGNVKDVLQELLSQLDAAETRQNGAALDAWWKQINEWRKR 361 Query: 375 DCLKYDRSSEIIKPQYVVEKIWELTKGDAFICSDVGQHQMWAAQFYKFDEPRRWINSGGL 434 DCLK+ S E IKPQ VV+K+WE+TKGDAFI SDVGQHQMWAAQ+Y FD+PRRWINSGGL Sbjct: 362 DCLKFATSEEFIKPQSVVQKVWEVTKGDAFITSDVGQHQMWAAQYYGFDKPRRWINSGGL 421 Query: 435 GTMGVGLPYAMGIKKAFPEKEVVTITGEGSIQMCIQELSTCLQYDTPVKICSLNNGYLGM 494 GTMGVGLPYAMG++ A P+ V ITGE SIQMCIQEL+TC QY KI LNN +LGM Sbjct: 422 GTMGVGLPYAMGVQMANPDATVACITGEASIQMCIQELATCKQYHLTPKIILLNNRFLGM 481 Query: 495 VRQWQEIEYDNRYSHSYMDALPDFVKLAEAYGHVGMRVEKTSDVEPALREAFRLKDRTVF 554 VRQWQ+I+Y +RYS SYMD+LPDF KLAE+YGHVGM++EK DV+ ALREAF +KDR VF Sbjct: 482 VRQWQQIDYGSRYSESYMDSLPDFNKLAESYGHVGMKIEKPGDVDGALREAFAMKDRLVF 541 Query: 555 LDFQTDPTENVWPMVQAGKGISEMLLGAEDL 585 ++F TD TENVWPMV+AGKG++EMLLG+EDL Sbjct: 542 MNFITDQTENVWPMVKAGKGLTEMLLGSEDL 572 Lambda K H 0.319 0.135 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 1036 Number of extensions: 31 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 585 Length of database: 572 Length adjustment: 36 Effective length of query: 549 Effective length of database: 536 Effective search space: 294264 Effective search space used: 294264 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 53 (25.0 bits)
Align candidate HSERO_RS08650 HSERO_RS08650 (acetolactate synthase)
to HMM TIGR00118 (ilvB: acetolactate synthase, large subunit, biosynthetic type (EC 2.2.1.6))
../bin/blast/fastacmd -i /tmp/list.30175.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.30175.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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