Align shikimate dehydrogenase (EC 1.1.1.25) (characterized)
to candidate 17344 b3281 dehydroshikimate reductase, NAD(P)-binding (NCBI)
Query= BRENDA::P15770 (272 letters) >FitnessBrowser__Keio:17344 Length = 272 Score = 541 bits (1394), Expect = e-159 Identities = 272/272 (100%), Positives = 272/272 (100%) Query: 1 METYAVFGNPIAHSKSPFIHQQFAQQLNIEHPYGRVLAPINDFINTLNAFFSAGGKGANV 60 METYAVFGNPIAHSKSPFIHQQFAQQLNIEHPYGRVLAPINDFINTLNAFFSAGGKGANV Sbjct: 1 METYAVFGNPIAHSKSPFIHQQFAQQLNIEHPYGRVLAPINDFINTLNAFFSAGGKGANV 60 Query: 61 TVPFKEEAFARADELTERAALAGAVNTLMRLEDGRLLGDNTDGVGLLSDLERLSFIRPGL 120 TVPFKEEAFARADELTERAALAGAVNTLMRLEDGRLLGDNTDGVGLLSDLERLSFIRPGL Sbjct: 61 TVPFKEEAFARADELTERAALAGAVNTLMRLEDGRLLGDNTDGVGLLSDLERLSFIRPGL 120 Query: 121 RILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGSIQALSMDELEGHE 180 RILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGSIQALSMDELEGHE Sbjct: 121 RILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGSIQALSMDELEGHE 180 Query: 181 FDLIINATSSGISGDIPAIPSSLIHPGIYCYDMFYQKGKTPFLAWCEQRGSKRNADGLGM 240 FDLIINATSSGISGDIPAIPSSLIHPGIYCYDMFYQKGKTPFLAWCEQRGSKRNADGLGM Sbjct: 181 FDLIINATSSGISGDIPAIPSSLIHPGIYCYDMFYQKGKTPFLAWCEQRGSKRNADGLGM 240 Query: 241 LVAQAAHAFLLWHGVLPDVEPVIKQLQEELSA 272 LVAQAAHAFLLWHGVLPDVEPVIKQLQEELSA Sbjct: 241 LVAQAAHAFLLWHGVLPDVEPVIKQLQEELSA 272 Lambda K H 0.321 0.138 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 394 Number of extensions: 10 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 272 Length of database: 272 Length adjustment: 25 Effective length of query: 247 Effective length of database: 247 Effective search space: 61009 Effective search space used: 61009 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 47 (22.7 bits)
Align candidate 17344 b3281 (dehydroshikimate reductase, NAD(P)-binding (NCBI))
to HMM TIGR00507 (aroE: shikimate dehydrogenase (EC 1.1.1.25))
../bin/blast/fastacmd -i /tmp/list.7690.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.7690.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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