Align Imidazole glycerol phosphate synthase subunit HisH; EC 4.3.2.10; IGP synthase glutaminase subunit; EC 3.5.1.2; IGP synthase subunit HisH; ImGP synthase subunit HisH; IGPS subunit HisH (uncharacterized)
to candidate Ga0059261_1046 Ga0059261_1046 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit
Query= curated2:Q5NMD4 (213 letters) >FitnessBrowser__Korea:Ga0059261_1046 Length = 199 Score = 248 bits (634), Expect = 4e-71 Identities = 127/206 (61%), Positives = 152/206 (73%), Gaps = 8/206 (3%) Query: 8 TVALIDYGAGNLRSVANALLASGLARENLVVTANPDEVLQADRVVLPGVGAFASCMQALK 67 ++ALIDYGAGNL SV NAL A+G A ++ VTA+PD VL+ADR+VLPGVGAF +C L+ Sbjct: 2 SIALIDYGAGNLHSVHNALKAAGAA--DVAVTADPDAVLKADRIVLPGVGAFGACASGLR 59 Query: 68 AIPDMVPALEKAVLEKGRPFLGICVGMQLLADQGEEYGVHQGLGWIKGKVTPLRPNDPSC 127 AIP MV AL++ VL PFLG+CVGMQLLA GEE G HQGLGW+ G V L + + Sbjct: 60 AIPGMVEALDQRVLTDAAPFLGVCVGMQLLAKTGEELGTHQGLGWLGGAVRELPAS--NV 117 Query: 128 KVPHMGWNQIGLTTDSHPLLRAGEAYFLHSYAFVPEDESTLLATTEHGGLVTAAVGRDNI 187 ++PHMGWN + + HPL+ GEAYFLHS+A+ E +LATTEHGG VTAA+GRDN Sbjct: 118 RIPHMGWNDV-VPIVPHPLIEPGEAYFLHSFAYSGE---AVLATTEHGGQVTAAIGRDNF 173 Query: 188 MGVQFHPEKSQSYGLEFLSRFLDWNP 213 GVQFHPEKSQ YGL L RFL WNP Sbjct: 174 AGVQFHPEKSQRYGLALLERFLRWNP 199 Lambda K H 0.318 0.136 0.409 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 203 Number of extensions: 11 Number of successful extensions: 5 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 213 Length of database: 199 Length adjustment: 21 Effective length of query: 192 Effective length of database: 178 Effective search space: 34176 Effective search space used: 34176 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 45 (21.9 bits)
Align candidate Ga0059261_1046 Ga0059261_1046 (imidazole glycerol phosphate synthase, glutamine amidotransferase subunit)
to HMM TIGR01855 (hisH: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit (EC 2.4.2.-))
../bin/blast/fastacmd -i /tmp/list.4957.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.4957.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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