GapMind for Amino acid biosynthesis

 

Alignments for a candidate for hisH in Sphingomonas koreensis DSMZ 15582

Align Imidazole glycerol phosphate synthase subunit HisH; EC 4.3.2.10; IGP synthase glutaminase subunit; EC 3.5.1.2; IGP synthase subunit HisH; ImGP synthase subunit HisH; IGPS subunit HisH (uncharacterized)
to candidate Ga0059261_1046 Ga0059261_1046 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit

Query= curated2:Q5NMD4
         (213 letters)



>FitnessBrowser__Korea:Ga0059261_1046
          Length = 199

 Score =  248 bits (634), Expect = 4e-71
 Identities = 127/206 (61%), Positives = 152/206 (73%), Gaps = 8/206 (3%)

Query: 8   TVALIDYGAGNLRSVANALLASGLARENLVVTANPDEVLQADRVVLPGVGAFASCMQALK 67
           ++ALIDYGAGNL SV NAL A+G A  ++ VTA+PD VL+ADR+VLPGVGAF +C   L+
Sbjct: 2   SIALIDYGAGNLHSVHNALKAAGAA--DVAVTADPDAVLKADRIVLPGVGAFGACASGLR 59

Query: 68  AIPDMVPALEKAVLEKGRPFLGICVGMQLLADQGEEYGVHQGLGWIKGKVTPLRPNDPSC 127
           AIP MV AL++ VL    PFLG+CVGMQLLA  GEE G HQGLGW+ G V  L  +  + 
Sbjct: 60  AIPGMVEALDQRVLTDAAPFLGVCVGMQLLAKTGEELGTHQGLGWLGGAVRELPAS--NV 117

Query: 128 KVPHMGWNQIGLTTDSHPLLRAGEAYFLHSYAFVPEDESTLLATTEHGGLVTAAVGRDNI 187
           ++PHMGWN + +    HPL+  GEAYFLHS+A+  E    +LATTEHGG VTAA+GRDN 
Sbjct: 118 RIPHMGWNDV-VPIVPHPLIEPGEAYFLHSFAYSGE---AVLATTEHGGQVTAAIGRDNF 173

Query: 188 MGVQFHPEKSQSYGLEFLSRFLDWNP 213
            GVQFHPEKSQ YGL  L RFL WNP
Sbjct: 174 AGVQFHPEKSQRYGLALLERFLRWNP 199


Lambda     K      H
   0.318    0.136    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 203
Number of extensions: 11
Number of successful extensions: 5
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 213
Length of database: 199
Length adjustment: 21
Effective length of query: 192
Effective length of database: 178
Effective search space:    34176
Effective search space used:    34176
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)

Align candidate Ga0059261_1046 Ga0059261_1046 (imidazole glycerol phosphate synthase, glutamine amidotransferase subunit)
to HMM TIGR01855 (hisH: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit (EC 2.4.2.-))

Software error:

../bin/blast/fastacmd -i /tmp/list.4957.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.4957.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.