Align Branched-chain amino acid aminotransferase (EC 2.6.1.42) (characterized)
to candidate Ga0059261_3811 Ga0059261_3811 branched-chain amino acid aminotransferase, group II
Query= reanno::Cup4G11:RR42_RS25890 (363 letters) >FitnessBrowser__Korea:Ga0059261_3811 Length = 362 Score = 462 bits (1188), Expect = e-135 Identities = 220/354 (62%), Positives = 266/354 (75%), Gaps = 1/354 (0%) Query: 7 FSLEPNPNALDAATRDALMRDPAFGRVFTDHMVTITWREGQGWQDAKVTARKPFSIDPAC 66 F E NPN + A+ R AL+ +P FG++FTDHM + W + +GW DAKV AR P S+DPA Sbjct: 6 FEFEANPNPVPASERAALLENPGFGKLFTDHMAMVRWSDTKGWHDAKVVARGPLSLDPAT 65 Query: 67 SVLHYGQEIFEGMKAYRGADGAVTLFRPLENARRFQASAKRMAMPALPESLFLEAIEQLV 126 +VLHY QEIFEG+KAYR D LFRPLENARRF+ SA+RMAMP LP+ LFL +IE LV Sbjct: 66 AVLHYAQEIFEGLKAYRTGDEGTALFRPLENARRFRESAQRMAMPELPDDLFLGSIEALV 125 Query: 127 RIDQAWVPH-GSGSLYLRPFMFANEVFLGIKPASEFIFCVIACPVGPYFKGGDKAVSVWV 185 + D+ W+P GSLYLRPFMFA+EVFLG+KPASE+++ VIA P G YFKGG AV++WV Sbjct: 126 KADREWIPQIEGGSLYLRPFMFASEVFLGVKPASEYLYLVIASPAGAYFKGGAPAVTIWV 185 Query: 186 SENYTRAAPGGTGEAKCGGNYAGSLVAQNEATANGCDQVVFLDAAEHRWVEELGGMNIFF 245 S++YTRAAPGGTG AKCGGNYA SLVAQ EA GCDQVVFLDA E RWVEELGGMN+FF Sbjct: 186 SDHYTRAAPGGTGAAKCGGNYASSLVAQAEAIREGCDQVVFLDAVERRWVEELGGMNLFF 245 Query: 246 VMDDGTLVTPPLSGSILPGITRASVIELAREMGMVVEERRYSYPEWEADAKSGRLAEAFV 305 V DDG++VTPPL G+ILPGITR S++ LARE G+ V E Y+ +W+ADA SG+L E F Sbjct: 246 VFDDGSMVTPPLGGTILPGITRESILTLAREQGITVREEPYAIDQWKADAGSGKLVETFA 305 Query: 306 CGTAATLVAIGEVRSARTRFAIGNGTAGNTVKVLRDRLVEIQRNQAAGPAGWVH 359 CGTAA + +G+V+S F IG+G G + L+ RL IQR QA GWVH Sbjct: 306 CGTAAVVTPVGKVKSRDGEFTIGSGGPGQVTEALKARLTAIQRGQAPDIHGWVH 359 Lambda K H 0.321 0.135 0.415 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 497 Number of extensions: 21 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 363 Length of database: 362 Length adjustment: 29 Effective length of query: 334 Effective length of database: 333 Effective search space: 111222 Effective search space used: 111222 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 49 (23.5 bits)
Align candidate Ga0059261_3811 Ga0059261_3811 (branched-chain amino acid aminotransferase, group II)
to HMM TIGR01123 (ilvE: branched-chain amino acid aminotransferase (EC 2.6.1.42))
../bin/blast/fastacmd -i /tmp/list.20948.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.20948.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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