GapMind for Amino acid biosynthesis

 

Alignments for a candidate for ilvE in Sphingomonas koreensis DSMZ 15582

Align Branched-chain amino acid aminotransferase (EC 2.6.1.42) (characterized)
to candidate Ga0059261_3811 Ga0059261_3811 branched-chain amino acid aminotransferase, group II

Query= reanno::Cup4G11:RR42_RS25890
         (363 letters)



>FitnessBrowser__Korea:Ga0059261_3811
          Length = 362

 Score =  462 bits (1188), Expect = e-135
 Identities = 220/354 (62%), Positives = 266/354 (75%), Gaps = 1/354 (0%)

Query: 7   FSLEPNPNALDAATRDALMRDPAFGRVFTDHMVTITWREGQGWQDAKVTARKPFSIDPAC 66
           F  E NPN + A+ R AL+ +P FG++FTDHM  + W + +GW DAKV AR P S+DPA 
Sbjct: 6   FEFEANPNPVPASERAALLENPGFGKLFTDHMAMVRWSDTKGWHDAKVVARGPLSLDPAT 65

Query: 67  SVLHYGQEIFEGMKAYRGADGAVTLFRPLENARRFQASAKRMAMPALPESLFLEAIEQLV 126
           +VLHY QEIFEG+KAYR  D    LFRPLENARRF+ SA+RMAMP LP+ LFL +IE LV
Sbjct: 66  AVLHYAQEIFEGLKAYRTGDEGTALFRPLENARRFRESAQRMAMPELPDDLFLGSIEALV 125

Query: 127 RIDQAWVPH-GSGSLYLRPFMFANEVFLGIKPASEFIFCVIACPVGPYFKGGDKAVSVWV 185
           + D+ W+P    GSLYLRPFMFA+EVFLG+KPASE+++ VIA P G YFKGG  AV++WV
Sbjct: 126 KADREWIPQIEGGSLYLRPFMFASEVFLGVKPASEYLYLVIASPAGAYFKGGAPAVTIWV 185

Query: 186 SENYTRAAPGGTGEAKCGGNYAGSLVAQNEATANGCDQVVFLDAAEHRWVEELGGMNIFF 245
           S++YTRAAPGGTG AKCGGNYA SLVAQ EA   GCDQVVFLDA E RWVEELGGMN+FF
Sbjct: 186 SDHYTRAAPGGTGAAKCGGNYASSLVAQAEAIREGCDQVVFLDAVERRWVEELGGMNLFF 245

Query: 246 VMDDGTLVTPPLSGSILPGITRASVIELAREMGMVVEERRYSYPEWEADAKSGRLAEAFV 305
           V DDG++VTPPL G+ILPGITR S++ LARE G+ V E  Y+  +W+ADA SG+L E F 
Sbjct: 246 VFDDGSMVTPPLGGTILPGITRESILTLAREQGITVREEPYAIDQWKADAGSGKLVETFA 305

Query: 306 CGTAATLVAIGEVRSARTRFAIGNGTAGNTVKVLRDRLVEIQRNQAAGPAGWVH 359
           CGTAA +  +G+V+S    F IG+G  G   + L+ RL  IQR QA    GWVH
Sbjct: 306 CGTAAVVTPVGKVKSRDGEFTIGSGGPGQVTEALKARLTAIQRGQAPDIHGWVH 359


Lambda     K      H
   0.321    0.135    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 497
Number of extensions: 21
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 363
Length of database: 362
Length adjustment: 29
Effective length of query: 334
Effective length of database: 333
Effective search space:   111222
Effective search space used:   111222
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)

Align candidate Ga0059261_3811 Ga0059261_3811 (branched-chain amino acid aminotransferase, group II)
to HMM TIGR01123 (ilvE: branched-chain amino acid aminotransferase (EC 2.6.1.42))

Software error:

../bin/blast/fastacmd -i /tmp/list.20948.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.20948.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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