GapMind for Amino acid biosynthesis

 

Alignments for a candidate for ilvI in Sphingomonas koreensis DSMZ 15582

Align acetolactate synthase (subunit 1/2) (EC 2.2.1.6) (characterized)
to candidate Ga0059261_0067 Ga0059261_0067 acetolactate synthase, small subunit (EC 2.2.1.6)

Query= BRENDA::P00894
         (163 letters)



>FitnessBrowser__Korea:Ga0059261_0067
          Length = 171

 Score =  133 bits (334), Expect = 2e-36
 Identities = 72/159 (45%), Positives = 109/159 (68%), Gaps = 3/159 (1%)

Query: 2   RRILSVLLENESGALSRVIGLFSQRGYNIESLTVAP-TDDPTLSRMTIQTVGDEKVLEQI 60
           R  L+V+++NE G L+R+ GLF+ RGYNIESLTV+  T+D  +SR+TI T      LEQI
Sbjct: 10  RHTLAVIVDNEPGILARIAGLFTARGYNIESLTVSEITEDKAVSRITIVTSASPATLEQI 69

Query: 61  EKQLHKLVDVLRVSEL-GQGAHVEREIMLVKIQASGYGRDEVKRNTEIFRGQIIDVTPSL 119
             QL +LV V +V +L  +G HVERE+ LVK+  +G  R E  R +E++R +++D T S 
Sbjct: 70  VAQLDRLVPVHKVHDLTAEGEHVERELALVKVAGTGDHRIEALRLSEVYRARVVDATISS 129

Query: 120 YTVQLAGTSGKLDAFLASIRDVAKIVEVARSGVVGLSRG 158
           +  ++ GT+ K+D F+  + +V  ++EVAR+G+V +SRG
Sbjct: 130 FVFEVTGTTEKIDKFIELMGEVG-LIEVARTGIVAISRG 167


Lambda     K      H
   0.318    0.136    0.360 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 87
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 163
Length of database: 171
Length adjustment: 18
Effective length of query: 145
Effective length of database: 153
Effective search space:    22185
Effective search space used:    22185
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 43 (21.2 bits)

Align candidate Ga0059261_0067 Ga0059261_0067 (acetolactate synthase, small subunit (EC 2.2.1.6))
to HMM TIGR00119 (ilvN: acetolactate synthase, small subunit (EC 2.2.1.6))

Software error:

../bin/blast/fastacmd -i /tmp/list.13271.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.13271.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.