Align acetohydroxyacid isomeroreductase (EC 1.1.1.86) (characterized)
to candidate Ga0059261_0066 Ga0059261_0066 ketol-acid reductoisomerase (EC 1.1.1.86)
Query= metacyc::MONOMER-18814 (338 letters) >FitnessBrowser__Korea:Ga0059261_0066 Length = 339 Score = 455 bits (1171), Expect = e-133 Identities = 221/339 (65%), Positives = 271/339 (79%), Gaps = 1/339 (0%) Query: 1 MKVFYDKDADLSLIKGKNVTIIGYGSQGHAHALNLKDSGVN-VTVGLRKSGASWNKAANA 59 M+V+YD+DADL+LI GK + I+GYGSQGHAHA NL+DSGV V + LR+ A+ KA A Sbjct: 1 MRVYYDRDADLNLITGKKIAIVGYGSQGHAHAQNLRDSGVKEVAIALREGSATAKKAEAA 60 Query: 60 GLQVKEVAEAVKGADVVMILLPDEQIADVYKNEVHDNIKEGAALAFAHGFNVHYGAVIPR 119 G +V EA + ADV+MIL PDE A +++N++ N+K G+A+AFAHG N+H+G + Sbjct: 61 GFKVLSNKEAAQWADVLMILAPDEHQAAIWENDLKGNMKPGSAIAFAHGLNIHFGLIEAP 120 Query: 120 ADLDVIMIAPKAPGHTVRATYTQGGGVPHLIAVHQNKSGAARDIALSYATANGGGRAGII 179 AD+DVIMIAPK PGHTVR+ Y +GGGVP LIAVHQ+ SG A D+AL+YA+ GGGR+GII Sbjct: 121 ADIDVIMIAPKGPGHTVRSEYVRGGGVPCLIAVHQDASGNAHDVALAYASGVGGGRSGII 180 Query: 180 ETNFREETETDLFGEQAVLCGGTVELIKAGFETLVEAGYAPEMAYFECLHELKLIVDLIY 239 ETNFREE ETDLFGEQAVLCGG L++AGFETLVEAGYAPEMAYFECLHELKLIVDL+Y Sbjct: 181 ETNFREECETDLFGEQAVLCGGATALVQAGFETLVEAGYAPEMAYFECLHELKLIVDLMY 240 Query: 240 EGGIANMNYSISNNAEYGEYVTGPRVVTEETKKAMKQCLTDIQTGEYAKSFLLENKAGAP 299 EGGIANM YSISN AEYG+ TGPR++TEETKK MK+ L DIQ+G + K F+L+N+AG P Sbjct: 241 EGGIANMRYSISNTAEYGDIKTGPRIITEETKKEMKRVLADIQSGRFVKDFVLDNRAGQP 300 Query: 300 TLISRRRLTAEHQIEEVGAKLRAMMPWIAKNKMVDQSKN 338 L + R HQIE+VG++LRAMMPWI NK+VD+ KN Sbjct: 301 ELKASRIAAKRHQIEQVGSELRAMMPWIGANKLVDKEKN 339 Lambda K H 0.316 0.133 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 456 Number of extensions: 21 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 338 Length of database: 339 Length adjustment: 28 Effective length of query: 310 Effective length of database: 311 Effective search space: 96410 Effective search space used: 96410 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 49 (23.5 bits)
Align candidate Ga0059261_0066 Ga0059261_0066 (ketol-acid reductoisomerase (EC 1.1.1.86))
to HMM TIGR00465 (ilvC: ketol-acid reductoisomerase (EC 1.1.1.86))
../bin/blast/fastacmd -i /tmp/list.682.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.682.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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