Align 2-isopropylmalate synthase; Alpha-IPM synthase; Alpha-isopropylmalate synthase; EC 2.3.3.13 (characterized)
to candidate Ga0059261_4031 Ga0059261_4031 2-isopropylmalate synthase, yeast type
Query= SwissProt::P06208 (619 letters) >FitnessBrowser__Korea:Ga0059261_4031 Length = 554 Score = 567 bits (1461), Expect = e-166 Identities = 295/561 (52%), Positives = 366/561 (65%), Gaps = 15/561 (2%) Query: 31 MLKDPSSKYKPFNAPKLSNRKWPDNRITRAPRWLSTDLRDGNQSLPDPMSVEQKKEYFHK 90 ML+DPS KY+PF L +R+WP+ ITRAPRWLSTD+RDGNQ+L DPM E+K +F Sbjct: 1 MLRDPSVKYRPFPPIALPDRQWPNRTITRAPRWLSTDMRDGNQALIDPMDAEKKTRFFDL 60 Query: 91 LVNIGFKEIEVSFPSASQTDFDFTRYAVEN--APDDVSIQCLVQSREHLIKRTVEALTGA 148 + +G KEIEV FPSA T+FDF V + PDDV++Q L Q+R LI T E+L GA Sbjct: 61 ICRVGIKEIEVGFPSAGATEFDFISGLVRDNRIPDDVTVQVLTQARRDLIDTTFESLRGA 120 Query: 149 KKATIHTYLATSDMFREIVFNMSREEAISKAVEATKLVRKLTKDDPSQQATRWSYEFSPE 208 K +H Y A S +R+IVF M R E A++A KL+R P T W +++SPE Sbjct: 121 KTGIVHVYNAVSPAWRKIVFGMDRAEVKQIAIDAAKLLRDNAAAQPD---TDWHFQYSPE 177 Query: 209 CFSDTPGEFAVEICEAVKKAWEPTEENPIIFNLPATVEVASPNVYADQIEYFATHITERE 268 FS +F+VE+C AV +PT E PIIFNLPATVE A+PN+YADQIEYF +I R+ Sbjct: 178 TFSTAEIDFSVEVCAAVMDVLQPTVERPIIFNLPATVECATPNIYADQIEYFCRNIPNRD 237 Query: 269 KVCISTHCHNDRGCGVAATELGMLAGADRVEGCLFGNGERTGNVDLVTVAMNMYTQGVSP 328 V +S H HNDRG GVAA ELGM+AGADRVEGCL GNGERTGN DLVTVAMNMYTQGV P Sbjct: 238 AVVVSLHTHNDRGTGVAAAELGMMAGADRVEGCLLGNGERTGNCDLVTVAMNMYTQGVDP 297 Query: 329 NLDFSDLTSVLDVVERCNKIPVSQRAPYGGDLVVCAFSGSHQDAIKKGFNLQNKKRAQGE 388 LDFSD+ ++ VE C IPV R PY GDLV AFSGSHQDAIKKGF Q A+ + Sbjct: 298 GLDFSDIDEIVKTVEYCTNIPVHPRTPYAGDLVFTAFSGSHQDAIKKGFAAQ---EARND 354 Query: 389 TQWRIPYLPLDPKDIGRDYEAVIRVNSQSGKGGAAWVILRSLGLDLPRNMQIEFSSAVQD 448 W +PYLP+DP D+GR YEAVIRVNSQSGKGG AWV+ + GL LP+ +Q +FS VQ Sbjct: 355 QYWEVPYLPIDPADLGRSYEAVIRVNSQSGKGGVAWVLEQDKGLKLPKRLQADFSRHVQR 414 Query: 449 HADSLGRELKSDEISKLFKEAYNYNDEQYQAISLVNYNVEKFGTERRVFTGQVKVGDQIV 508 AD REL + +I F E Y + Q +L Y+ + R+F G ++V Sbjct: 415 VADESSRELNAQDIWATFVETYRL--KHPQRFTLGAYDETRASNGERIFAGSIEVDGVQQ 472 Query: 509 DIEGTGNGPISSLVDALSNLLNVRFAVANYTEHSLGSGSSTQAASYIHLSYRRNADNEKA 568 + G GNG ISS+V A+ V +A+Y EH++G GS QAA+Y+ R AD Sbjct: 473 SVSGRGNGLISSVVAAMREGFGVDLDIADYAEHAIGHGSGAQAAAYVEC---RTADGRTV 529 Query: 569 YKWGVGVSEDVGDSSVRAIFA 589 WGVG+ EDV +SVRA+ + Sbjct: 530 --WGVGIDEDVATASVRAVLS 548 Lambda K H 0.315 0.131 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 819 Number of extensions: 35 Number of successful extensions: 6 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 619 Length of database: 554 Length adjustment: 37 Effective length of query: 582 Effective length of database: 517 Effective search space: 300894 Effective search space used: 300894 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 53 (25.0 bits)
Align candidate Ga0059261_4031 Ga0059261_4031 (2-isopropylmalate synthase, yeast type)
to HMM TIGR00970 (leuA: 2-isopropylmalate synthase (EC 2.3.3.13))
../bin/blast/fastacmd -i /tmp/list.23886.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.23886.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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